Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq21 120 3e-22 >seq21 Length=852027 Score = 120 bits (132), Expect = 3e-22 Identities = 176/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || |||||| ||| || || || |||| |||||| | ||||||||| Sbjct 417070 TACATCCGAGGAACGAATGGCTACTCGAATGGTCTTCTCCCGATGCTCAGAGTCTTCAAC 417129 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | || ||||||||||| |||||||| || || | | || || |||| | || Sbjct 417130 GATGCCGCGCGCTACGTCGACCAGGGCGGCGGCAAACGCAAAGGCAGCCTCGCCATTTAC 417189 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||| || || | |||| ||||| | ||||||||||||||| Sbjct 417190 TTGGAGCCATGGCACTTTGATGTCTTCGATTTCCTCGACATCAAAAAGAACCACGGCAAG 417249 Query 94252 GATCTGGAG---AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || |||| | || | |||||||||| || |||||| | ||||| || || ||| Sbjct 417250 GA---GGAGCGACGTGCTCGCGACCTCTTCTGTGCCCTCTGGATCCCAGATCTCTTCATG 417306 Query 94309 AAACGCGT 94316 ||||||| Sbjct 417307 GAACGCGT 417314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494631298981560