Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq14788 140 3e-28 seq11078 84.2 2e-11 >seq14788 Length=481 Score = 140 bits (154), Expect = 3e-28 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 155932 CGCGCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTG 155991 ||||| |||||||||||| | | ||||| ||||| ||||||||||||||| ||| Sbjct 229 CGCGCAATCAACTGGAACATCATTGAAGACGACAAGGATCTGGAGGTGTGGAACCGTCTG 170 Query 155992 ACCAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGT-GGCA 156050 ||| ||||||||||||||| || || | ||| |||| || ||| | | ||||| |||| Sbjct 169 ACCTCCAACTTCTGGCTGCCAGAAAAAGTGCCGTTGTCGAACGACATTCCGTCGTGGGCA 110 Query 156051 CCA--GCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATG 156108 || | | | ||||| ||| ||| ||||| ||||||||||||||||||||| || Sbjct 109 ACATTGACGCCAAAGGAACAGCAACTG---ACCATCCGGGTGTTCACCGGCCTGACGCTG 53 Query 156109 CTGGACACCATCCAGGGCACCGTCGGCGC 156137 || || ||||| || |||||||| || Sbjct 52 CTCGATACCATTCAAAATACCGTCGGGGC 24 >seq11078 Length=364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | ||||||| |||||||||| ||||||||||||||| ||| | | ||||||||| Sbjct 174 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 115 Query 92675 CCCACTCCC 92683 || |||||| Sbjct 114 CCTACTCCC 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526500577764720