Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq14564 131 2e-25 seq21 129 6e-25 seq14858 104 2e-17 seq57 82.4 8e-11 >seq14564 Length=527 Score = 131 bits (144), Expect = 2e-25 Identities = 209/292 (72%), Gaps = 10/292 (3%) Strand=Plus/Plus Query 27962 GAAAACAACAAGCGCTTTGATAAACA---TCCCGAGAAAATTGTGGCCGCCTATTTCGTC 28018 ||||| || || | ||| ||||||| | ||| ||| | || | | | ||||| || Sbjct 231 GAAAAGAATAAAC-CTT--ATAAACAAGATTCCGGCAAAGTGGTCGGCTCTTATTTTGTG 287 Query 28019 GAGTGGGGCGTGTATCTGCGGCAGTTTC-CCGTCGACAAAGTGCCCGCGCCCAACCTGTC 28077 || |||||||| || | || | | |||| ||||||| || |||| |||| |||||| | Sbjct 288 GAATGGGGCGTATA-CGGCCGTAATTTCACCGTCGATAAGCTGCCGGCGCAAAACCTGAC 346 Query 28078 GCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACGCCCTCAA 28137 ||| ||||||||||| || | ||||| || ||||| || ||||| |||||| || || Sbjct 347 GCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGGTGATGGCATCAACGACAGTCTGAA 406 Query 28138 GACCGTTC-CCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCCGACTTCA 28196 | | || || || ||| ||||| ||||||| || ||| || || | ||||| | Sbjct 407 -AGAGATCGAAGGTAGCTTCCAGGCGTTGCAGCGTTCCTGCCAGGGCCGTGAGGACTTTA 465 Query 28197 AGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGT 28248 | ||| | ||||||||||| | ||||| | ||||| ||||||||||| Sbjct 466 AAGTGTCAATCCACGATCCGTTTGCCGCGTTGCAGAAAGGCCAAAAGGGCGT 517 >seq21 Length=852027 Score = 129 bits (142), Expect = 6e-25 Identities = 404/616 (66%), Gaps = 26/616 (4%) Strand=Plus/Minus Query 153302 GGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361 ||| || ||||| || |||||||| ||| | |||| || ||| ||| | | | || Sbjct 418280 GGCGAGCTCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTGTT 418221 Query 153362 GAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAG 153421 | ||| ||||| ||| ||| |||| ||| || |||| |||||||| || || Sbjct 418220 CAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGCGAG 418161 Query 153422 ACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTAT 153481 |||||||| || | |||| ||||| || | |||||| | |||| | | Sbjct 418160 ACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCTTCGGGCAC 418101 Query 153482 GGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTAT-CG 153540 || |||| || |||||||| | ||| | ||| | | || ||||| || || Sbjct 418100 AGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGATTCG 418041 Query 153541 CCTTAAGTTTCTCGAAATCATAGGTCA---TTTCG---TCGACG--CGTACGCATCGATT 153592 | | |||| | ||||| || | ||| | ||| || ||| | | ||| ||| Sbjct 418040 CTTCAAGTGT-TCGAAGTCGAAAGTCCGGCTCTCGCGGTCCACGAACTTGGGCAGCGAG- 417983 Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGA 153651 |||| | |||| || ||||| ||| ||| || | ||| |||||| |||| Sbjct 417982 -ACGG------AGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCG-TGTACTCGACGA 417931 Query 153652 TCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGAT 153711 || | ||| | |||||||||||| || ||||| || | ||| ||||| || |||| Sbjct 417930 CTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGAT 417871 Query 153712 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT-- 153769 |||| ||||||||| | ||||||||||| ||| ||||||| ||||| | || || Sbjct 417870 TGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCG 417811 Query 153770 -AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATC 153828 ||||| | |||| ||| ||| | | | || |||| || || |||| ||||| | Sbjct 417810 CAAACCAA---AGGTGCTGAGCTGGAATCGTCTTCCGACCCCGACCTTCGCGTTCGTAGC 417754 Query 153829 GCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCG 153888 ||||||||| | || |||||||| | || | | || || |||| | | Sbjct 417753 GCTCGTACAACTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCCGGGCACTCGTTGG 417694 Query 153889 GACACATCAGCGACCA 153904 |||||||||||| ||| Sbjct 417693 GACACATCAGCGTCCA 417678 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 154298 CATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTT 154357 ||||||||| | | || || || || |||||||| | || ||||| || | || Sbjct 416651 CATTTGCGGGCGGGGGGTGCCGGCGTTGAACAGGGTGGGCGTTGCATGCGTGAAGAACTT 416592 Query 154358 TTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAG 154417 || ||||||| ||| |||||||| || | || | ||| | | ||||||||| Sbjct 416591 CTGACTCATCAGTTCGTAGGTTTCGATCGCTTTCTCCACATCCCCACAATGAATGCCGCA 416532 Query 154418 CGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAG 154477 |||||| | ||||||||||||||| ||||| ||| | | | | || ||||||| ||| Sbjct 416531 CGCGACTCTCATGAGCATGTGCTGGGGACGCTCGACAATCCGGTCGTGGATCTTCAGGAG 416472 Query 154478 ATA 154480 || Sbjct 416471 GTA 416469 >seq14858 Length=1827956 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | |||||||| |||||||||||||| | Sbjct 1580283 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580224 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| | || || || | | | || |||||||| || || || || Sbjct 1580223 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580164 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||| || | | || | |||||| | || ||| || Sbjct 1580163 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580104 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 1580103 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580057 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | |||||||| |||||||||||||| | Sbjct 1580912 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580853 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| | || || || | | | || |||||||| || || || || Sbjct 1580852 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580793 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||| || | | || | |||||| | || ||| || Sbjct 1580792 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580733 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 1580732 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580686 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | |||||||| |||||||||||||| | Sbjct 1581664 CCACCACGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1581605 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| | || || || | | | || |||||||| || || || || Sbjct 1581604 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1581545 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||| || | | || | |||||| | || ||| || Sbjct 1581544 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1581485 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 1581484 TCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1581438 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 |||||| || || || | | |||||||| |||||||||||||| || ||| || Sbjct 1581129 ACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCC 1581070 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| || | || || || | | | || |||||||| || || || || |||||||| || Sbjct 1581069 GTCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTT 1581010 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| ||| || | | || | |||||| | || ||| || || | ||| | Sbjct 1581009 GTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGAT 1580950 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || ||||| || ||||| |||||||| Sbjct 1580949 GGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580914 >seq57 Length=138120 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 52475 AGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCA 52534 |||| | ||||| ||||| || ||| ||||||||||| || |||||||| |||||||| Sbjct 25694 AGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGACTGCA 25635 Query 52535 CACGGACTTTGCGTG---CCTCTACT 52557 | | ||||||||||| |||||||| Sbjct 25634 CGCAGACTTTGCGTGTCTCCTCTACT 25609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496170213055920