Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq9425 266 1e-66 >seq9425 Length=1279 Score = 266 bits (294), Expect = 1e-66 Identities = 460/664 (69%), Gaps = 6/664 (1%) Strand=Plus/Minus Query 6 CGGAAACGTGAACCAGGGGTTTCAT--CTGCGGAACATCAATCAACGCCATCAGTTTGTG 63 |||||||||| |||| || |||| ||||| | ||| |||| || | || || || Sbjct 1279 CGGAAACGTGCACCAACGGCGTCATTTCTGCG--ATATCGATCAGGGCATTGAGCTTATG 1222 Query 64 TTTATTACGATGGGTAAAGAGATAATCAAACAGGCGTGGTTGACGCGTTTTT-ACCAGTT 122 || || || || | || | |||||||| || ||||| || | ||| |||| | Sbjct 1221 CTTGTTGCGGTGTTGCAGCAGGAAGTCAAACAGCCGGGGTTGG-GCTTGTTTGACCAACT 1163 Query 123 TCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTGCTATGTTCAA 182 | ||||| || || || ||||| ||||| | ||| || || || || | ||||| | Sbjct 1162 TGGCCATGGCGATGGTCGCGTAAACATCCGACATGGCGTCATGAGCCTGTTCGTGTTCGA 1103 Query 183 TACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGTCATCATTTTCAG 242 || || || || | || || | || || ||||| | || || || ||||| | Sbjct 1102 CGCCGTTGGCGCGAGTCAGGTGTTCCAAACGGAAACTCGGGAACCCATCTTCGTTTTCCG 1043 Query 243 GCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCAGTAAATCCC 302 ||||| || || ||||||||||| ||||||||||||||||| || || || | |||| Sbjct 1042 GCCAGACGATACCGTCCGGGCGCAGCGCATAGCAGGCACGCATCACGTCGAGCAGGTCCC 983 Query 303 AGCGCGAGTTATCATGCTGCCAGCTCCAGGCGTAAGGATCGTAGAAATTACGATAAAAAA 362 |||| || || | | |||||||| | ||||| |||||||| || | || || || | Sbjct 982 AGCGGGAATTGCCGTTTTGCCAGCTGTAAGCGTAGGGATCGTAAAAGCTGCGGTAGAAGA 923 Query 363 CGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGCCCAGAATACAGGTCTTCG 422 ||||| |||||||||| |||||||| | ||||||||| |||||||||||||| | Sbjct 922 TATTGCGGCTGACTTCGTCATCGAAACGAATATTGTTGTAACCCAGAATACAGGTGCCAG 863 Query 423 GTACGGTAAAAAGCGAGTGAATACGGGCGGCAAATGCGGCTTCGTTTTCTCCTTTCGCCC 482 | || | || | ||||| || ||||| |||||||||| | ||||||||| Sbjct 862 GCACACTGAATGCCTGATGAATTTGGCGCGCAAACTCGGCTTCGTTGACACCTTTCGCCA 803 Query 483 GAGCTTCCTGCGGGGTAATACCGGTAATTAATACTGCTCCAGGCTGGGGTAAATAGTCAT 542 | || ||||| ||||||||||| || | || ||| |||| | || || ||||| | Sbjct 802 GTGCCAATTGCGGCGTAATACCGGTGATCATCACCGCTTCAGGATCAGGCAAGTAGTCGT 743 Query 543 CCGCGGGCTTGCAGTAAAAGACTTCGGGTTCGCCGATGACATTGAATTCGTCATCGGTGC 602 | || || |||| || | ||| ||||| |||||| |||||| || |||||| | Sbjct 742 CGGCCGGGGTGCAATAGATGACCAGTGGTTCTTCGATGATATTGAAATCCATATCGGTAC 683 Query 603 GAATGGCTGCGAACTGTGCAGGGCGATCTAACGCGGGGTGCGTGCCAAAGGTTTCGTAAT 662 | | | || ||||| || ||||| || | | ||| | || ||||||||||| | Sbjct 682 GCACACCGGCAAACTGCGCCGGGCGGTCCATTGATGGGCTTTTACCGAAGGTTTCGTAGT 623 Query 663 CGTG 666 |||| Sbjct 622 CGTG 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198709603507468