Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_011551.1 Length=39867 Score E Sequences producing significant alignments: (Bits) Value seq10212 215 1e-51 >seq10212 Length=656 Score = 215 bits (238), Expect = 1e-51 Identities = 435/642 (68%), Gaps = 10/642 (2%) Strand=Plus/Minus Query 26218 TGCATATCAATTTGTGACCACGCTAAATTAATGATATTTGAACGACGTAACCCGGTTGCC 26277 |||||||| ||||| ||||| || | | || || || || ||||| | || || | Sbjct 654 TGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGGTT 595 Query 26278 AGCGCAAATTCAACCGTCGATCTAAGGGGTTCAGGACATTCATTGATTAATCTTTCTGCT 26337 || ||||||||||| || ||| |||| ||||| || || |||| | ||| | || ||| Sbjct 594 AGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTGCC 535 Query 26338 TCATCCGGTTCTAACCATCTAATACGTTTTTCTCTAGCCGATGGAACCTTAATAACCGGT 26397 | | | ||||| | ||| | || || || | ||| || || ||||| || || ||| Sbjct 534 TGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTGGT 475 Query 26398 GATTTTTCTATCCATTTCCAATCTCTTTCAGCAGATCTCATCATTGATTTAAGTAGTGCC 26457 || ||||||||||| |||||||| ||||| |||| | ||| | | || | | || Sbjct 474 GACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAGCA 415 Query 26458 AAATGCTTAGCTTTTGTTGCTATAGAAACTTCTTTCGCTTGATAAGCGG--GTATTTCTA 26515 | |||||||| ||||||| | ||||| | | | || | |||| |||| | | Sbjct 414 AGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAGATT--TTCGCGGCGGTATCACAA 357 Query 26516 TTCCTTTTCTTTTTGC---TGAATTAACTCTACTTTTCCATCTTAATTGTTGCTGCCTAT 26572 | ||||| || || || || ||| | ||| ||| | | | || ||||| Sbjct 356 TGCCTTTC---TTAGCCATTGCATCAACACGCATTTGCCAGCGCTCCTCTGCCTTCCTAT 300 Query 26573 TTTTCATTTTGCTAATAGCACTATATATTTTTGCTTCTGTCATATCTTTTAATCGGGTAC 26632 | |||| ||||| || | || |||||||| || || ||||| || ||| | Sbjct 299 TGGTCATGCGGCTAACTGCGGTGTAGATTTTTGCCTCGGTTATATCCTTCAATAAAACCC 240 Query 26633 CGCTGAAATACAGTAGCCAAAAACCAAGTCTACCCTTGTCATCGTCTAAAGATTTCTTGT 26692 | |||| || ||||| || |||| | |||||||| | || | |||||||||| Sbjct 239 CCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGATTTCTTGT 180 Query 26693 TAGCCTTCTCTTCAATCCATCTCAAGCAGGCTTCGTCAAATGTGACATTAGGAAAATCAT 26752 || || ||||| | ||| | || ||| || || |||||||| ||||| || || || Sbjct 179 GCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCACATTCGGGAAGTCCC 120 Query 26753 CTAACTTTGCTATTCTCCATAATTCAGCTTTTCGTTTGTCGTGTAACTCCTGAGCTTGTT 26812 | || |||||||||| | ||||||||||| |||||| | |||||| ||||| Sbjct 119 CCAAACGCTCTATTCTCCAAAGTTCAGCTTTTCTACGGTCGTGCAGCTCCTGCGCTTGGC 60 Query 26813 TTTTGTCCTCTGTGCCAAGTGATTCCTTAATTCTTTTTCCGC 26854 | ||||| || ||||| ||||||||||||| || |||| Sbjct 59 GTCTGTCCGAAGTCCCAAGCGATTCCTTAATTCGCTTGCCGC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127430307846778