Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq14564 111 1e-19 seq14858 96.9 3e-15 seq14857 95.1 1e-14 >seq14564 Length=527 Score = 111 bits (122), Expect = 1e-19 Identities = 264/391 (68%), Gaps = 10/391 (3%) Strand=Plus/Plus Query 22175 TTATGTAACGTCAACGGTTGTTCGACCAGCAGCGCCGTTAAAGTGGTCGTCGCCGATACG 22234 |||||||| | | |||| ||| | ||||| || | || | || || |||||||| Sbjct 132 TTATGTAATGCCGACGGCTGTACCGCCAGCGATGCGACTGAAATTGTTGTGGCCGATACC 191 Query 22235 GACGGTTCGCATTTGGCGCCTCTCGC-GTACGACTATTTTGAAAACAACAAGCGTT-TCA 22292 ||||| |||||||| || | | || || || ||||| || || | || | | Sbjct 192 GACGGCAGCCATTTGGCACCCTTAAAAGAACCGCTGTTG-GAAAAGAATAAACCTTATAA 250 Query 22293 AGACGCATCCTAATAAAATTGTCGCCGGCTATTTTGTCGAGTGGGGAGTGTACCTTCGCC 22352 | | | ||| ||| | |||| | |||||||| || ||||| || ||| || Sbjct 251 ACAAGATTCCGGC-AAAGTGGTCGGCTCTTATTTTGTGGAATGGGGCGTATACGGCCGTA 309 Query 22353 AGTTTCCCGCCGACAAGGTGCCCGTGCCGAACCTGTCGCATTTGCTCTACGGTTTCGTGC 22412 | || ||| ||| ||| |||| | || |||||| |||||||||| ||||| || | | Sbjct 310 ATTTCACCGTCGATAAGCTGCCGGCGCAAAACCTGACGCATTTGCTGTACGGGTTTATCC 369 Query 22413 CAATATGCGGCGGAGACGGCATCAACGACGCCCTGAAAACGGTGCCGGGAAGCTTCGAGG 22472 | || || ||||| || |||||||||||| |||||| | | || |||||| ||| Sbjct 370 CGATCTGTGGCGGTGATGGCATCAACGACAGTCTGAAAGAGATCGAAGGTAGCTTCCAGG 429 Query 22473 CGTTGCAACGGTCGTGC---GTCAATAGAGCCGATTTCAAGGTGACCATACACGATCCGT 22529 ||||||| || || ||| | | | ||| || || || ||| | || |||||||||| Sbjct 430 CGTTGCAGCGTTCCTGCCAGGGCCGT-GAG--GACTTTAAAGTGTCAATCCACGATCCGT 486 Query 22530 GGGCGGCCGTACAAAAACCTCAAAAAGGCGT 22560 || || | || ||| ||||| ||||| Sbjct 487 TTGCCGCGTTGCAGAAAGGCCAAAAGGGCGT 517 >seq14858 Length=1827956 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | ||||| ||||| || | || ||||| || ||||| ||||| || Sbjct 1580284 TCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGA 1580225 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || | ||| || ||||| | |||| ||||||||||| || || Sbjct 1580224 CAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGG 1580165 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 1580164 AATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAAC 1580105 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| ||||| || ||||| |||||||| Sbjct 1580104 ATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580057 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | ||||| ||||| || | || ||||| || ||||| ||||| || Sbjct 1580913 TCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGA 1580854 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || | ||| || ||||| | |||| ||||||||||| || || Sbjct 1580853 CAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGG 1580794 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 1580793 AATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAAC 1580734 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| ||||| || ||||| |||||||| Sbjct 1580733 ATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| || | || ||||| || ||||| ||||| || | Sbjct 1581664 CCACCACGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1581605 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||| || ||||| | |||| ||||||||||| || || Sbjct 1581604 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1581545 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 1581544 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1581485 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| ||||| || ||||| |||||||| Sbjct 1581484 TCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1581438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 126890 CCGCGTAAT-CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCAT 126948 ||||| || ||||| ||||| || | || ||||| || ||||| ||||| || || Sbjct 1581138 CCGCGAAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAG 1581079 Query 126949 CGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTAT 127008 || || || || | ||| || ||||| | |||| ||||||||||| || || || Sbjct 1581078 AGTTCGGCCGTCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAAT 1581019 Query 127009 GCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 || ||||||||| ||| || ||| | | |||| |||||| | ||| || || Sbjct 1581018 ACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATC 1580959 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || || ||||| ||||| || ||||| |||||||| Sbjct 1580958 AAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580914 >seq14857 Length=2032611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || || || || |||||||| Sbjct 1173484 TCCTCGAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTA 1173425 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || || ||||| | ||||| |||||| | | |||||| || | || | | Sbjct 1173424 TCCTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATC 1173365 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || || ||||||||||| Sbjct 1173364 GTCTTGCCGGTGAGCGTCTTCACGAAAATCTGCAT 1173330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475412469782640