Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq10212 194 5e-45 >seq10212 Length=656 Score = 194 bits (214), Expect = 5e-45 Identities = 415/615 (67%), Gaps = 14/615 (2%) Strand=Plus/Minus Query 22165 GATGATGTTAGACCGCCTAAGTCCTGTTGCCAGCGCAAATTTAACAACAGATTTCAACGG 22224 ||| |||||||| || | || || || | || ||||||| ||| |||||| | || Sbjct 625 GATAATGTTAGAGCGACGGAGGCCAGTGGTTAGTGCAAATTCAACGGTAGATTTAAGAGG 566 Query 22225 TTCAGGGCATTCATCAATCAGGCGTTTTGCCTCTTCTTTCTCCAGCCATCTGACGCGTTT 22284 ||| ||||| ||||| | | ||||| ||||| | || ||||| | || || || Sbjct 565 TTCTGGGCACTCATCTACTAAGCGTTGTGCCTGAGCGGGTTCGAGCCACCGAACTCGCTT 506 Query 22285 GTTTCTGACGGCTGGAACCTTGATTACAGGCGCTTTCTCCAGCCATTTCCAGTCACGTTC 22344 |||||| | || |||||||| || || | || || | ||| ||||| || | ||| Sbjct 505 GTTTCTTTCCTGCGGCACCTTGATCACTGGTGACTTTTCTATCCACTTCCAATCCCTTTC 446 Query 22345 TGCTGCACGCAGAATAGCCTTCATTAATGCCAGGTGTTTGGCCTTAGTGGAGGTTTTGAC 22404 || || |||| || ||||||||| || || ||||| || ||||| || || ||| || Sbjct 445 CGCAGCCCGCATAAGAGCCTTCATCAAAGCAAGGTGCTTAGCCTTTGTTGAAGTTGAAAC 386 Query 22405 CGGTTTAGCTGAATAGATTGGTGCAGGT-TCTCCATTC--TTCTGCGCC---GCGGCAGC 22458 | | || | || | | ||| || | || | |||| ||| || || | Sbjct 385 GGCCTCAGATT------TTCGCGGCGGTATCACAATGCCTTTCTTAGCCATTGCATCAAC 332 Query 22459 TTTGATTTTCCATATCTCAAGCTGT-TTGCGGTTGCTCATCTTGTTTACTGCTAAGTAAA 22517 |||| ||| ||| ||| || | ||| |||| | | ||||| ||| | Sbjct 331 ACGCATTTGCCAGCGCTCCT-CTGCCTTCCTATTGGTCATGCGGCTAACTGCGGTGTAGA 273 Query 22518 TCTTTTGCTCGGTTACATCCTTTAACCGTACTCCCTCAAAATGCGCCAGCCAGAAAGCCA 22577 | ||| |||||||| |||||| || || |||||||||||| |||||||| | | Sbjct 272 TTTTTGCCTCGGTTATATCCTTCAATAAAACCCCCTCAAAATGCATGAGCCAGAATCCAA 213 Query 22578 TACGGCTACGGTCATCTTTCAGTGATTTCTTCTCCGCTTTTTCCTCAAGCCAGCGCATGC 22637 | |||| ||| | | ||||||||||| | ||||||||| || | |||||||| || Sbjct 212 TCCGGCCCTTGTCTGCATCGAGTGATTTCTTGTGCGCTTTTTCTTCTAACCAGCGCAGGC 153 Query 22638 AGGCATCATCAAACGTTACATCAGGGAAATCACCAAGCCTGTCTACTCGCCACAATTCAG 22697 | || || ||||| || |||| ||||| || || | | |||| || ||| | ||||| Sbjct 152 AAGCCTCTTCAAATGTCACATTCGGGAAGTCCCCCAAACGCTCTATTCTCCAAAGTTCAG 93 Query 22698 CTTTGCGCTTGTCATGTAGCTCAGTAGCGAGCCGCTTGTCGGAAGTCCCAAGGCTTTCCT 22757 |||| | ||| || ||||| || | || |||| ||||||||||| ||||| Sbjct 92 CTTTTCTACGGTCGTGCAGCTCCTGCGCTTGGCGTCTGTCCGAAGTCCCAAGCGATTCCT 33 Query 22758 TAATTCGCTTCCCGC 22772 |||||||||| |||| Sbjct 32 TAATTCGCTTGCCGC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137505329549796