Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq14564 138 1e-27 seq21 100 3e-16 >seq14564 Length=527 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 50871 ACGCCCTTTTGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACACTTTAAAATCG 50930 ||||||||||| |||||| | ||| || |||| ||||| || ||||||||||| || Sbjct 517 ACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACACTTTAAAGTCC 458 Query 50931 GCTCGGCCGGCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGACGGTTTTCAACGCG 50990 | ||||| ||| |||||||||| ||||| ||| || || || ||||| | Sbjct 457 TCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTCTTTCAGACTG 398 Query 50991 TCGTTGACGCCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAATGCGACAAATTG 51050 ||||||| ||| || ||||| || ||||| | || |||||||||||||||| || || Sbjct 397 TCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATGCGTCAGGTTT 338 Query 51051 GGGGCAGGAATTTTGTCAGCGGCGAACGCACGCGCGTACACTCCCCATTCTACAAAATA 51109 | || || | || || ||| ||| ||| |||| || |||||||| |||||||| Sbjct 337 TGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTCCACAAAATA 279 >seq21 Length=852027 Score = 100 bits (110), Expect = 3e-16 Identities = 213/311 (68%), Gaps = 18/311 (6%) Strand=Plus/Plus Query 123453 TGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTT 123512 ||| |||| ||||||||| | ||| || || |||| || || | ||| | | || Sbjct 417678 TGGACGCTGATGTGTCCCAACGAGTGCCCGGGTTTGACGGAGGTGTGGGGCGACGAATTC 417737 Query 123513 GACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGG---TTCCGGCA 123569 | |||||||||| || ||||| |||||||| | || | | || |||| || Sbjct 417738 AAAGAGTTGTACGAGCGCTACGAACGCGAAGGT---CGGGGTCGGAAGACGATTCCAGCT 417794 Query 123570 CGTGA--TTTGTTCAAATTT--ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACAT 123625 | | |||| | || ||| || | | ||| |||| || || ||||||||||| Sbjct 417795 CAGCACCTTTGGT----TTGCGATTCTCCAGGCGCAAATCGAGACGGGCACGCCGTACAT 417850 Query 123626 GCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATG 123685 ||| ||||||||||| ||||| |||| | ||| |||| ||||||||||| || ||||| Sbjct 417851 GCTGTACAAAGACGCTTGCAATCGGAAGAGCAACCAGAAGAACTTGGGAACTATCAAATG 417910 Query 123686 TAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC--CGATCAAGTGGCCGTGTGT 123743 || || | ||| | ||| | |||| |||| ||| || || | ||||| || || Sbjct 417911 CAGCAACTTGTGCACAGAAGTCGTCGAGTACA-CGA-GCAAAGACGAGGTGGCTGTCTGC 417968 Query 123744 AATTTGGCTTC 123754 || ||||| || Sbjct 417969 AACTTGGCCTC 417979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451919234755560