Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq8365 95.1 5e-15 >seq8365 Length=642 Score = 95.1 bits (104), Expect = 5e-15 Identities = 385/583 (66%), Gaps = 43/583 (7%) Strand=Plus/Minus Query 55011 TACCAGAAGGCGCTCGAGCAGCGCATCACCGCGATCCGCAACCGCAAGGGCCCGCCGAAG 55070 ||||||| | ||||| ||||||||| |||||| | ||| | | |||| || Sbjct 563 TACCAGACGCTGCTCGGCGAGCGCATCAAGGCGATCGAGGAGCGCGACCGTGCGCCCGAG 504 Query 55071 AAGGGCGAGGACATCATCCTGAACGTGATCGCGGACGGCCGTTTCTCCGCGATCGACATG 55130 ||||| |||||| || || || ||| | || ||||| | | ||||||||| || Sbjct 503 CCCGGCGACGACATCCTCTTGTCGGTCATCACCGATGGCCGCCACGCGGCGATCGACCTG 444 Query 55131 CGCTTCGTTGA-CCCGACCGCGCCGAGCGACCCGAACAGCAAGCTGAACCAGATGATCG- 55188 ||| | || || |||||| | | | ||| | ||| ||||||||||||| | ||| Sbjct 443 CGCCTGGTCGATCCCGACAATGACAA-CGAGGCCGACAACAAGCTGAACCAGCTCGTCGG 385 Query 55189 --ACGCCGTG---ATC---GCCGA--CTACCACGCGGCATCCGACTTCGAGTATTCG-AC 55237 ||||| | ||| | ||| || || ||| || || | | |||| || Sbjct 384 CAACGCCTTCCGCATCTGGGGCGATACTGCCGAGCG-CA-CCTA-------TGTTCGCAC 334 Query 55238 GAACGGCAAGG---TCGACCCGATCAAGGGCGCGTCGCACATCATCTTCACCGACATCGG 55294 |||||||| |||| | | | |||||| |||| || |||||| | ||| |||| Sbjct 333 CGACGGCAAGCCGTTCGAACTGCCC---GGCGCGGCGCAGATGATCTTCTCGGACCTCGG 277 Query 55295 GCTCGGCGAGCAGTCGGCGAAGAACCGCGGCTTC--GACATGAAGGCGTGGAT-CGAGAA 55351 | | ||| |||| |||| ||||||||| | | | | || ||||| || || Sbjct 276 CACCATC-AGC-GTCGA-GAAGTCGCGCGGCTTCTCGGCCT-ATCGC-TGGATTCGCGAC 222 Query 55352 GCGCCTGACGGACGGCGGCGTGCCGCGCGAGC-AGATCGCGTTCATGCGCGACAACAAGG 55410 | || | | | | ||||||||| || | | ||||| ||||||| || |||| Sbjct 221 GAGCTCGTCCGCATG-GGCGTGCCG-GCATCCGAAATCGCCTTCATGCAGGATTTCAAGA 164 Query 55411 AGCACGCGAAGAAGGAGCGCCTGTTCGCGGACATGCGCGAGGGCAAAAAGCGCGTGCTGA 55470 || | | |||| |||||||||||| ||| |||||| ||||| ||| | |||| Sbjct 163 AGTCGGAGGCGAAGCAGCGCCTGTTCGGCGACGTGCGCGCCGGCAAGGTCCGCTTCCTGA 104 Query 55471 TCGGCGGCAAGGACA---TGGAAACCGGCGTCAACGTGCAGAAGCGCCTCTACACCGAGG 55527 |||| || ||||| ||| ||||||||||||| |||| ||||||| | || | Sbjct 103 TCGGGAGCTCGGACACGATGGGGACCGGCGTCAACGCGCAGCTGCGCCTCAAGGCCTTGC 44 Query 55528 AGCATCTGGACGCGCCGTGGTTCCCGGCATCCGTCGAGCAGCG 55570 | || || |||| ||||||| | ||| | |||||||||| Sbjct 43 ATCACCTCGACGTGCCGTGGCTGCCGTCGCAGATCGAGCAGCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200526874306596