Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq57 98.7 2e-15 seq21 87.8 3e-12 >seq57 Length=138120 Score = 98.7 bits (108), Expect = 2e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 ||||| ||||||||||| ||||||||||||||| ||||| || |||||||| || | Sbjct 25614 AGGAGACACGCAAAGTCTGCGTGCAGTCCCTCGTCGCGAGAAATCAACTCGTTCGAGAAA 25673 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCT 160035 ||||||||||||| | || ||| || ||||| ||||| | |||| |||| || || Sbjct 25674 GTGAGGCCCGGCATCAAGCCTCGCTTCTTCAGCCAGAAAATAG-CGCAGAAGCTTCCACT 25732 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 || | || || |||||| ||||| |||| Sbjct 25733 GAAGAGAATGCCTTCCACGCATGCAAAGCCCAC 25765 >seq21 Length=852027 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/151 (75%), Gaps = 9/151 (6%) Strand=Plus/Minus Query 204271 AATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTA 204330 |||||||| |||||||||||||||||| |||| || ||| || ||||| | |||||||| Sbjct 418983 AATCTGAGAGGTGCTGGCCGTGGGCATAGGAGACACGAGGAGAGAGTTCCTCACACCGTG 418924 Query 204331 TTTTTGGACCCTGCGCT-TCAGAGAGGTCCAGTCGTGC--ATCGC---ACTGGGTTTCAC 204384 || | || || | || ||||| |||||| | | ||| || ||| |||| Sbjct 418923 CTTCTTGA-TCTTCTCTCTCAGACCATCCCAGTCACACAAACCGCTCGACGGGG--TCAC 418867 Query 204385 GCCCCACATGTCGAACTGAAAGATGCCTTGA 204415 |||||||||||||||||| | ||||| ||| Sbjct 418866 GCCCCACATGTCGAACTGGAGAATGCCCTGA 418836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795007489982160