Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14564 187 2e-42 seq14857 132 5e-26 seq14858 102 8e-17 >seq14564 Length=527 Score = 187 bits (206), Expect = 2e-42 Identities = 205/270 (76%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 62448 CCACGCGGTCACGCCCTTTTGCGGCTTT-TGCACGGCCGCCCACGGGTCGTGCACCGCCA 62506 ||| ||||| ||||||||||| | |||| |||| || || |||| ||||| | | || Sbjct 527 CCAGGCGGTAACGCCCTTTTG-GCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACA 469 Query 62507 GTTTGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGG 62566 ||| ||||| || |||||| ||| || ||||||| ||||| |||||| || |||| Sbjct 468 CTTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCT 409 Query 62567 ACTTGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGAT 62626 || || |||||||||||||| || ||||| || ||||| | || |||||||||| || Sbjct 408 CTTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAAT 349 Query 62627 GCGTGAGGTTGGGCACGGGCACCTTGTCGGCGGGAAACTCGCGTCCGTACACGCCCCACT 62686 |||| ||||| || | |||| ||| ||| ||| || | || ||||| |||||||| | Sbjct 348 GCGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATT 289 Query 62687 CGACGAAATAGGCGCCCACCACCTTGCCGG 62716 | || ||||| | ||| ||||| ||||||| Sbjct 288 CCACAAAATAAGAGCCGACCACTTTGCCGG 259 >seq14857 Length=2032611 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || |||||||| ||||| || ||||| | ||||||||| | Sbjct 1173327 AAAATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCT 1173386 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| | || | || || | || || ||||||||||| | ||| Sbjct 1173387 TCTGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGAC 1173446 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| ||||| || |||| | ||||| ||||||| Sbjct 1173447 CAGCAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTAC 1173506 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 |||||||| |||||| | || || || |||||| Sbjct 1173507 AACATCCAGAAGGAATCCACTCTCCACTTGGTG 1173539 >seq14858 Length=1827956 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || || || |||||||| | || || ||| | Sbjct 1580054 AAAATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCG 1580113 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | ||| |||| ||||| || || |||||| | || Sbjct 1580114 TCAGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGAT 1580173 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || |||| || ||||| ||| |||| |||| || || || |||||| Sbjct 1580174 CAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTAC 1580233 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||||| |||| || || ||||| ||||| Sbjct 1580234 AACATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGT 1580272 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || || || |||||||| | || || ||| | | Sbjct 1580685 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580744 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| || || |||||| | || || Sbjct 1580745 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1580804 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| || ||||| ||| |||| |||| || || || |||||||| Sbjct 1580805 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1580864 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| || || ||||| ||||| Sbjct 1580865 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGT 1580901 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || || || |||||||| | || || ||| | | Sbjct 1580913 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580972 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| || || |||||| | || || Sbjct 1580973 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1581032 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| || ||||| ||| |||| |||| || || || |||||||| Sbjct 1581033 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGAACTCTGTCTGACTACAA 1581092 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| || || ||||| ||||| Sbjct 1581093 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGT 1581129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || || || || ||||| | || || ||| | | Sbjct 1581437 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTC 1581496 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| || || |||||| | || || Sbjct 1581497 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1581556 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| || ||||| ||| |||| |||| || || || |||||||| Sbjct 1581557 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1581616 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| || || ||||| ||||| Sbjct 1581617 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGT 1581653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500079886650240