Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq4204 185 1e-41 seq5078 125 1e-23 >seq4204 Length=800 Score = 185 bits (204), Expect = 1e-41 Identities = 323/463 (70%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 124647 TCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACTTGCAACCTGTGCAATGATT 124706 ||||| ||||| ||||| ||| ||||||||||||| || || || |||||||| ||||| Sbjct 785 TCGTCGATGCGGTTAATGGTGGTGCCACCATAAATATGGCTGGCGACCTGTGCGATGATC 726 Query 124707 TGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGTTTCGATCTGTGCATTACCC 124766 || || || || || | ||||| | ||| ||| || | |||||||| ||||||||| Sbjct 725 TGTGCGGTGACGGCGGTCGCGGTGGAGATCGACTTCGGTGGTTCGATCTCGGCATTACCC 666 Query 124767 ATGCGGAA-CCCACGCTCTAACATGCCGTTGAGATCAATCAACATGCAGTTAAACATTGG 124825 || ||| || | || | |||||| || | ||| |||| ||||||||| ||||| || Sbjct 665 ATTTTGAAGCCGTTGGTC-AGCATGCCTTTCAAATCGATCAGCATGCAGTTGAACATAGG 607 Query 124826 GAAGAACGGAGAGTAATCAAGATCATGGAAGTGAATAAAACC-AGCTTCGTGTGCTTGCA 124884 |||||| || |||||||| ||||| ||| |||| || || |||||||| || ||| Sbjct 606 GAAGAAGGGCGAGTAATCGAGATCGTGGTAGTGGATCTCGCCGCGCTTCGTGGGCCAGCA 547 Query 124885 GAACTTCGGTCGGCAG---ATAGTGCTTTGCAAAGTGCTTGCTTACTATGCCCGCGACTA 124941 || || ||||| || || || || | |||||| || || || || | | Sbjct 546 CCACGTCACGTGGCAGGATATGCTGTTTGGCGTAATGCTTGGCGACGATCCCGGCCAGCA 487 Query 124942 AATCGCGTTGTGTCGGAATAACTTTTGCATCTTTGTTTGCATTCTCATTCATGATCCCTT 125001 ||||| || || || || || || ||||| || ||||| || |||| | | | Sbjct 486 GGTCGCGCTGGGTGGGGATCACCTTGCTGTCTTTATTGGCATTTTCGTTCAGCAACGCCA 427 Query 125002 CGTCTTCTTGCTTCATCAGTCCGACGATTCGCTTGGTCATATCG-CTGTTCATATCGCGA 125060 || ||| | || ||| ||| || || |||||| ||| | || ||||| Sbjct 426 TGTTGCTTTGTTCCACCAGGCCG-CGGATCTCTTGGTTGAGTCGCCCACGCAGCTCGCGC 368 Query 125061 GCAACGTCACGATCATAGCGGTATTCGATGTAGGCGCGAGCCA 125103 || ||||||||||| | || || ||||| |||||||| |||| Sbjct 367 GCCACGTCACGATCGTGACGATACTCGATATAGGCGCGTGCCA 325 >seq5078 Length=902 Score = 125 bits (138), Expect = 1e-23 Identities = 282/416 (68%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 123222 TGTTTGACACGACGCTGGACTTCGTCCTGTTTGCCGACGTTAAATGCGCGAG-ATCCAGG 123280 ||||| || || || | ||||| ||||| ||||| |||| || | | | |||| || Sbjct 412 TGTTTCACCCGGCGTTTCACTTCTTCCTGCTTGCCTGCGTTGAACGGTCTGGCATCC-GG 354 Query 123281 GTTACCCAAATACCCACAGACGCGACGAATAACGTTCATCTT--ACGGTCATCGTGATTG 123338 | |||| | || || || || ||||| ||||| || ||| | || |||||||| Sbjct 353 GCTACCGAGGTAGCCGCACACCCGACGCGTAACGGACACCTTGGATGGC--TCGTGATTA 296 Query 123339 CCACACTTCGGACATTCGTATCCTTTAGAAGTAGCGGTAAACTCACCGTTAAATCCACAT 123398 || || ||||| || | | ||||| ||| || || || ||| |||| ||||| Sbjct 295 CCGCATTTCGGGCAGGTGAAGCCTTTGCTGGTACAGGAGAATTCGCCGGTAAAGCCACAC 236 Query 123399 TCAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGGAGTGTTCCGATAAGCATAA 123458 || | || |||| | || ||||| || || || || || | | || ||| Sbjct 235 TCGTAGCACTCATCGATCGGCGTGTTGGTACCGTAATAAGGCACGCGGCTGTAGCTGTAA 176 Query 123459 TCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCACCGTATGAA 123518 ||||| || |||| ||||||| ||| ||||||| || ||||| ||||| ||||| | Sbjct 175 TCCCATACATCTTCCAGTGCTTTCAGGTTGTGTTGCAGGTTCGGGTATTCGCCGTAACAG 116 Query 123519 ATGAAACCACCGGTA-CTAA--GCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATAC 123575 ||||| || || | | || |||| | | || ||||||||| | |||||| ||| Sbjct 115 ATGAACCCCCCATTGGCCAATGGCGG---GTAAGGCGCTTCAAAATCCAGCTTGTCGTAC 59 Query 123576 GGATTTGTGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTTATC 123631 ||||| || | || || ||||||||||||||| ||||||||| | || || Sbjct 58 GGATTGACCTTTTTCTCTACGTCCAGATGGAAGCTGTTGGTGTAATAGCCCTTGTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720595715467680