Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq14858 91.5 6e-13 >seq14858 Length=1827956 Score = 91.5 bits (100), Expect = 6e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || || || || || ||||||||||| | || Sbjct 1580913 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580972 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | || ||| || || || |||||||| ||||| |||||||| Sbjct 1580973 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1581032 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | ||||| | || || || | ||||| || ||||| || | || || || Sbjct 1581033 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGAACTCTGTCTGACTACAA 1581092 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| | ||||| | || || ||||| || || Sbjct 1581093 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTT 1581125 Score = 91.5 bits (100), Expect = 6e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || || ||||| || ||||||||||| | || Sbjct 1581437 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTC 1581496 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | || ||| || || || |||||||| ||||| |||||||| Sbjct 1581497 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1581556 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | ||||| | || || || | || || || ||||| || | || || || Sbjct 1581557 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1581616 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| | ||||| | || || ||||| || || Sbjct 1581617 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTT 1581649 Score = 87.8 bits (96), Expect = 7e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || || || || || ||||||||||| | || Sbjct 1580056 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580115 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | || ||| || || || |||||||| ||||| |||||||| Sbjct 1580116 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1580175 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | ||||| | || || || | || || || ||||| || | || || || Sbjct 1580176 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1580235 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| | ||||| | || || ||||| || || Sbjct 1580236 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTT 1580268 Score = 87.8 bits (96), Expect = 7e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || || || || || ||||||||||| | || Sbjct 1580685 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580744 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | || ||| || || || |||||||| ||||| |||||||| Sbjct 1580745 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1580804 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | ||||| | || || || | || || || ||||| || | || || || Sbjct 1580805 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1580864 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| | ||||| | || || ||||| || || Sbjct 1580865 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTT 1580897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975342210250988