Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2 105 5e-17 seq10923 93.3 3e-13 >seq2 Length=4461408 Score = 105 bits (116), Expect = 5e-17 Identities = 248/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||| || || || | |||||| |||||||| ||||| ||||| || | | || || Sbjct 3485715 ATACCGTTAGCGTCGATATCAAAAGTGACTTCGATTTGGGGGACACCACGGGGGGCGGGG 3485656 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || ||||| | ||| | ||||| || || ||||| || | || ||| Sbjct 3485655 GGGATACCATCCAAGTGGAATTTGCCCAGGAGGTTGTTGTCTTTGGTCATCGCACGCTCA 3485596 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || ||| | | || || ||| | | || || || | || ||||| || |||| Sbjct 3485595 CCTTCGTACACCTGAATCAGCACTCCTGGCTGGTTGTCCGCGTACGTTGTGAAGG-TCTG 3485537 Query 517454 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 || || ||| || || ||||||||||| ||||| | |||||||| | |||||| || Sbjct 3485536 AGACTTCTTAGTCGGGATCGTTGTGTTTCTCTCAATCAGCTTGGTCATGACACCACCAGC 3485477 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 ||| || | ||| ||||| || || | ||||| | || | | || || | || Sbjct 3485476 TGTCTCCAGACCGAGAGAGAGGGGCGCAACATCCAGAAGAAGCAAATCCTGCA-CTTGGG 3485418 Query 517573 ATCAGTT--TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | | | || |||| || ||||| || | ||||||||| || ||||| || ||| Sbjct 3485417 AGCTGGTAACTCCCTTCAAG-ATCGCTGCCTGGACAGCAGCACCGTACGCAACGGCCTCA 3485359 Query 517631 TCAGGATT 517638 ||||| || Sbjct 3485358 TCAGGGTT 3485351 >seq10923 Length=1010 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||| || || || || | ||||||||||| ||||| || || || | || | Sbjct 985 TTTATCCAGGCCGTAAGCCAGGGCAGCAGCAGTCGGTTCGTTGATGATACGTTTTACTTC 926 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||||| || || | || || |||||||| || || | |||| ||||| || ||||| Sbjct 925 CAGACCTGCGATACGACCGGCGTCTTTAGTCGCCTGACGCTGTGCGTCGTTGAAGTATGC 866 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 ||||||||| ||||| || |||||||| || || | ||| | ||||||| || Sbjct 865 AGGAACAGTGATAACCGCTTCAGTTACCGGTTCGCCCAGGTAATCTTCAGCCGTTTTCTT 806 Query 518347 CATTTT 518352 |||||| Sbjct 805 CATTTT 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780084948227866