Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 452 5e-122 seq5946 96.9 4e-15 seq14 96.9 4e-15 >seq2 Length=4461408 Score = 452 bits (500), Expect = 5e-122 Identities = 1096/1649 (66%), Gaps = 32/1649 (2%) Strand=Plus/Minus Query 6510 TCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTT 6569 |||| || || |||||||| || || |||||||||||||| || | | || || || Sbjct 3485909 TCATGTGGTAGCAGTAGTTCTCCAGGCCATTCTTCGCCTCCACGCGGTGCTTGTTCTGTT 3485850 Query 6570 CATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT- 6628 | ||||| | || ||||| || || ||||| ||||| || || ||| || Sbjct 3485849 CGTCTTCGGCCTTGTACTTCTCTGCCTCTTGCACCATGCGGTCGAT---TTCGGACGCAC 3485793 Query 6629 --AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 | | ||||| || || || || || || | | | || || | || ||| |||| Sbjct 3485792 TGAGGCGGCCCTTGTCGTTGGTGATGGTGATTTGGTTGCTCTTTCCGGTGGACTTGTCTT 3485733 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 || | || |||| ||||| || || || | ||| || | || | ||||| || Sbjct 3485732 GCGCCGTGACGTTCATGATACCGTTAGCGTCGATATCAAAAGTGACTTCGATTTGGGGGA 3485673 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 ||| | || |||| || ||||| || | ||| | || || | |||| || Sbjct 3485672 CACCACGGGGGGCGGGGGGGATACCATCCAAGTGGAATTTGCCCAGGAGGTTGTTGTCTT 3485613 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTG 6866 | | | || ||| |||||||| || || | ||| ||| | || || || || Sbjct 3485612 TGGTCATCGCACGCTCACCTTCGTACACCTGAATCAGCACTCCTGGCTGGTTGTCCGCGT 3485553 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 ||||| |||| | || ||||||| || ||||| || |||||| ||| | | || Sbjct 3485552 ACGTTGTGAAGGTCTGAGACTTCTTAGTCGGGATCGTTGTGTTTCTCTCAATCAGCTTGG 3485493 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | |||||| || || || || ||||| || || | || |||| || | || Sbjct 3485492 TCATGACACCACCAGCTGTCTCCAGACCGAGAGAGAGGGGCGCAACATCCAGAAGAAGCA 3485433 Query 6987 GGTCTTGAACA---GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 || || || || | | || ||| | ||||| || || ||||| | || | Sbjct 3485432 AATCCTGCACTTGGGAGCTGGTAACT---CCCTTCAAGATCGCTGCCTGGACAGCAGCAC 3485376 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| || || |||||||| ||||| |||| | | | || || ||||| || | | Sbjct 3485375 CGTACGCAACGGCCTCATCAGGGTTGATCGACCTGCACGGCTCCTTTCCGTTGAAGAAGT 3485316 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 | | | | || || || || ||||| || || |||||||| ||||| || | ||| Sbjct 3485315 CAGTGATGAGCTGCTGGATCTTGGGGATACGGGTAGATCCACCAACCAACACAACTTCGC 3485256 Query 7164 TCACTTTCGAT---TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATAC 7220 | || ||| || || || ||||| || || ||||| || || Sbjct 3485255 TGAC---CGAACGCTTGTCAATACCAGAGTCCTTGAGGACCTTCTCGACGGGCAACAAGG 3485199 Query 7221 ATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGA 7280 | || ||||| ||||||| || || ||||||||||| ||||||| || || | || Sbjct 3485198 AGTTGCGGAAGTAGTCCATGCAAAGCTCCTCAAAACGCGCACGGGAGATAGACACAGAGT 3485139 Query 7281 AATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACG 7340 | |||| ||| ||| | | || |||||||| ||||||| || | | ||| | | Sbjct 3485138 AGTCAATGCCCTCGAAAAGAGAGTCAATTTCGATGGTTGCCTGAGTGCTGCTAGAGAGAG 3485079 Query 7341 TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAA 7400 ||| ||| | |||||| ||| || || | |||||||||||||| ||| | | Sbjct 3485078 TTCTCTTGGTGCGCTCGCACTGGGTACGCAGCCGACGAAGGGCACGGCTGTTGGTGCTGA 3485019 Query 7401 TATC-TTTCTTATGTT--TACGTTTAAACTCTT---CAGAGAAGTGT-CGAAGGAGTCTC 7453 | || |||| ||| | || || || || | | |||||| | || || Sbjct 3485018 TGTCCTTTCCGCGGTTCTTGCGCTTGAAGTCCTGGACGCAGAAGTCCACCAAACGGTTG- 3484960 Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 ||||||||||||||||| | || ||||| || ||||| || ||||||||||||||| Sbjct 3484959 ---TCGAAATCTTCACCACCAAGATGGGTATCACCAGCGGTGGCCTTGACTTCAAAGATA 3484903 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || |||| || | | || ||| ||||| || ||||| ||||||| ||| || ||||| Sbjct 3484902 CCGTCTTCGATTGTAAGCAGCGACACATCGAAAGTACCGCCACCCATGTCGAAGATGAGG 3484843 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 |||||| | || || ||||| || ||||| || ||||| || ||||| || || Sbjct 3484842 ACGTTCATCTCACCGCAGCCCTTCTTGTCCAGACCATAGGCGATGGCTGCCGCTGTAGGC 3484783 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || |||||||| || | | ||||| ||||| || | ||||| || || || || Sbjct 3484782 TCGTTGATAATACGGAGGACGCTGAGGCCGGCAATGGTACCAGCATCCTTGGTAGCCTGA 3484723 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || ||||||||||| ||||| || ||||| || | ||| || ||| | |||| ||| ||| Sbjct 3484722 CGCTGCGAATCGTTGAAGTACGCGGGGACGGTAATGACGGCCTCCTTCACTTCCTTGCCG 3484663 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 || || | |||||||| || ||||||||| | ||||| | |||| |||||| | Sbjct 3484662 AGGTAAGCCTCCGCGATTTCCTTCATTTTGCCCAACACCATGGCGGAAACCTCTTCGGGG 3484603 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 ||| ||| | || || | | |||||||| | ||| || || | | ||| Sbjct 3484602 TGGAACGTCTTCTTCTCTCCCTGGTACGTGACTTCAATGAGGGGCTTGTCTCCCGGACCA 3484543 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | ||| ||||| | | ||||| ||||| || |||||| |||| |||||| Sbjct 3484542 GCGATGACCTTGAATGGCCAATGCTTCATGTCCGACTGGACCGAGGGGTCATCAAACTTG 3484483 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| || ||||| ||||| |||| ||||||| ||||| || ||||||| Sbjct 3484482 CGGCCGATTAGGCGCTTGGCATCGAAAATGGTGTTTTCCGGGTTGCGTGCGACTTGGTTC 3484423 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 ||||| || || |||| ||| | || | | || || ||||||||||| || |||||| Sbjct 3484422 TTCGCAGCATCACCGACAAGTC--TC-TCCGTGTCGGTGAACGCGACGTAGGACGGGGTC 3484366 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 || | || || ||||||||||| || ||||| || ||||| | ||| || || ||| Sbjct 3484365 GTCCTGTTTCCCTGGTCGTTCGCGATGATTTCCACAGCATCGTTCTTCCACACACCTACG 3484306 Query 8114 CACGAATACGTTGTTCCTAAATCAATACC 8142 || ||||| || || || | |||||||| Sbjct 3484305 CAAGAATAGGTGGTGCCAAGGTCAATACC 3484277 >seq5946 Length=242 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/187 (73%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 7592 TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 ||| |||| |||||||| || |||| ||||||||||| || || || || || || || Sbjct 58 TTGGTCTTGTCGAGACCATAAGCGAGCGCCGCCGCCGTCGGCTCGTTGATGATGCGCAG- 116 Query 7652 CAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAA 7710 || |||||||| || || ||||| || || || || || || || || | ||||| || Sbjct 117 CACTTCAGGCCGGCGAT-CTTGCCGGCGTCCTTGGTGGCCTGACGCTGGGCGTCGTTGAA 175 Query 7711 GTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGAT 7770 |||||| || || || | ||| || | ||| |||| ||||||| | ||||||| | Sbjct 176 GTAGGCGGGAACGGTGATGACGGCCTGATCGACCTTCTGGCCGAGATGGGCTTCCGCGGT 235 Query 7771 ATCTTTC 7777 || ||| Sbjct 236 CTCCTTC 242 >seq14 Length=1276701 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| | ||||| | || || | ||||| |||| | | ||||||| Sbjct 630818 CCAATGAGACGCTTGACGTCAAAGAGCGTATTGGTCGGGTTGATGGTCGCCTCGTTCTTC 630759 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| || || | | | || || || || || || ||||| | Sbjct 630758 GCGGCTTCACCGATCTTGCGGTCGTCGT---CGGTGAAAGCAACATAAGAGGGGGTGATA 630702 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||||| || || || |||||| ||| | | || ||||||||| Sbjct 630701 CGGTTACCCTGGTCGTTCGGGATGATGTCCACGCGGCCGTGGCGGTACACACCGACGCAC 630642 Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145 || || || ||||| |||||||||||||| Sbjct 630641 GAGTAGGTCGTTCCCAAATCAATACCGAT 630613 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || |||||||| ||||||||||| || || | | ||| | | || | |||| | Sbjct 631526 GAGACATCAAAAGTACCACCACCAAGATCGTACACGAGGATGGTCTTCTCGT------TC 631473 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || ||||||||||| ||||| || || || || || || || ||||| | | | Sbjct 631472 TTCTTGTCCAGACCGTACGCAATAGCAGCAGCGGTCGGCTCGTTGATGATACGGATAACG 631413 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||| ||||||||| | | || || || || || ||||| || | ||||| ||||| Sbjct 631412 TTCAAGCCAGCAATCGCACCGGCGTCCTTGGTGGCCTGTCGCTGAGCGTCGTTGAAGTAA 631353 Query 7715 GC 7716 || Sbjct 631352 GC 631351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635014816143240