Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq14564 87.8 1e-12 >seq14564 Length=527 Score = 87.8 bits (96), Expect = 1e-12 Identities = 173/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 6289 AACGCCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTC 6348 |||||| || || ||| ||||||||||| | ||||| || ||| || ||||| Sbjct 518 AACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACACTTTAAAGTC 459 Query 6349 ATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAGGAA--TTGGGAATCTGCTTGAGG 6406 || || || |||||| ||| | ||||| ||| | || | |||| || || Sbjct 458 CTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCG--ATCTCTTTCAGA 401 Query 6407 GCGTCGTTTATGCCGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGA 6466 |||||| ||||| | ||| ||||| || || || ||||||||||||| |||||||| Sbjct 400 CTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATGCGTCAGG 341 Query 6467 TTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAA 6526 || | || | ||| || | || || | | ||| || || ||||| ||||| ||| Sbjct 340 TTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTCCACAAAA 281 Query 6527 TACGCACCGACGAC 6540 || | ||||| || Sbjct 280 TAAGAGCCGACCAC 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324574802869608