Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 120 2e-21 seq10923 98.7 8e-15 >seq2 Length=4461408 Score = 120 bits (132), Expect = 2e-21 Identities = 360/550 (65%), Gaps = 7/550 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | ||||| || | || ||||| ||| ||| || ||||| ||| | || | | Sbjct 3484271 GCTGTGGGTATTGACCTTGGCACCACCTATTCTTGCGTAGGTGTGTGGAAGAACGATGCT 3484330 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| || || || || || || ||||| || || || || || || | ||||| Sbjct 3484331 GTGGAAATCATCGCGAACGACCAGGGAAACAGGACGACCCCGTCCTACGTCGCGTTCACC 3484390 Query 550112 GAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || || | | || || |||||||| || || | |||| | | | || || || Sbjct 3484391 GACACGGAGAGACTT-GTCGGTGATGCTGCGAAGAACCAAGTCGCACGCAACCCGGAAAA 3484449 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || ||||| ||||| || || |||| || | | ||| |||| | | || ||| | Sbjct 3484450 CACCATTTTCGATGCCAAGCGCCTAATCGGCCGCAAGTTTGATGACCCCTCGGTCCAGTC 3484509 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGA 550287 || |||||||||||||| ||| | | | || | | ||| || || ||||| Sbjct 3484510 GGACATGAAGCATTGGCCATTCAAGGTCATCGCTGGTCCGGGAGACAAGCCCCTCATTGA 3484569 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTT 550346 || || | | ||| | || | || || || ||| | |||| | ||||| | Sbjct 3484570 AGTCACGTACCAGGGA-GAGAAGAAGACGTTCCACCCCGAAGAGGTTTCCGCCATGGTGT 3484628 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | |||||||| ||| || |||| | || | ||||| | ||| || || | Sbjct 3484629 TGGGCAAAATGAAGGAAATCGCGGAGGCTTACCTCGGCAAGGAAGTGAAGGAGGCCGTCA 3484688 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || || || || || ||||| ||||| || |||||||| | Sbjct 3484689 TTACCGTCCCCGCGTACTTCAACGATTCGCAGCGTCAGGCTACCAAGGATGCTGGTACCA 3484748 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| || || | || || ||||||||||| || ||||| || || || | || |||| Sbjct 3484749 TTGCCGGCCTCAGCGTCCTCCGTATTATCAACGAGCCTACAGCGGCAGCCATCGCCTATG 3484808 Query 550527 GACTTGATAA 550536 | || || || Sbjct 3484809 GTCTGGACAA 3484818 >seq10923 Length=1010 Score = 98.7 bits (108), Expect = 8e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || || || || || ||||| || ||||| || || ||| |||| ||||| || ||| Sbjct 839 GTAACTGAAGCGGTTATCACTGTTCCTGCATACTTCAACGACGCACAGCGTCAGGCGACT 898 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||| || || ||||| || || || | || ||||| ||||| ||||| |||||| Sbjct 899 AAAGACGCCGGTCGTATCGCAGGTCTGGAAGTAAAACGTATCATCAACGAACCGACTGCT 958 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| || || || || || |||||| Sbjct 959 GCTGCCCTGGCTTACGGCCTGGATAAA 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028510083296890