Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq14555 107 6e-19 >seq14555 Length=438 Score = 107 bits (118), Expect = 6e-19 Identities = 219/326 (67%), Gaps = 22/326 (7%) Strand=Plus/Plus Query 45994 ATGTTTATCGCGCAGATGGGCCACGAGTCCGGCGGCTTCACCCGGCTGGTGGAAAACCTG 46053 |||||||| || ||| | || || ||||| ||||| ||||||||| | |||||||||| Sbjct 8 ATGTTTATTGCACAGGTTGGACATGAGTCTGGCGGATTCACCCGGACAGCGGAAAACCTG 67 Query 46054 AACTATTCGGCAGAAAACCTGGTATCTACGTTTGGCAAGCATCGCATTACTGCACAGCAG 46113 || || || | || |||| | |||| ||||| ||| |||||||| | | ||| Sbjct 68 AATTACACGCCGCAAGGCCTGCTGGCTACATTTGGAAAG---CGCATTACGGTTTATCAG 124 Query 46114 GCCGCCGCACTCGGCAGAACGGCAACGCAACCGGCAAATCAAAAAGCGATAGCCAATCTG 46173 | | || ||| | ||||| |||| || || ||||| |||| || ||||||||| Sbjct 125 TCGGATATGCTGGGCCGCACGGCTGCGCACCCAGCCAATCAGGAAGCTATCGCCAATCTG 184 Query 46174 GTTTATGGCGGTGAGTGGGGCAAAAAGAACCTGGGCAACCAGGTTGCTGGTGATGGCTGG 46233 || || | || | |||||||||| | ||||| || ||| Sbjct 185 GTATACGCCG---------------ATCGCCTGGGCAACAAATCACGCGGTGACGGGTGG 229 Query 46234 AAATATCGCGGTCGCGGCCTGAAGCAAATCACCGGGCTCAG--CAATTACCGCAACTGTG 46291 ||||||||||| || || |||| || || ||||| |||| |||||||| || | Sbjct 230 AAATATCGCGGCCGTGGACTGATTCAGATTACCGG--TCAGGATAATTACCGGGCATGCG 287 Query 46292 GCCACGCGCTGAAGTTGGACCTTGTA 46317 | |||| ||||| | ||||| ||| Sbjct 288 GTACCGCGTTGAAGCTTGACCTGGTA 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158493624999716