Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq2293 334 1e-86 seq14546 109 1e-18 >seq2293 Length=1342 Score = 334 bits (370), Expect = 1e-86 Identities = 480/671 (72%), Gaps = 14/671 (2%) Strand=Plus/Minus Query 208267 CGTTACCTTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGA 208326 |||| ||||||||||| | |||||| ||||| |||||||| || |||||| || |||| Sbjct 1342 CGTTGCCTTCCATCAGTTCACGTTCCGCAAAGGCGAATGAACAGGCGAAGCTGACATAGA 1283 Query 208327 AACGAATAGCTTCAAGTGAGTTGATAGATTGCAGAGCCAGGTACAG-TGCTTTCTTAATA 208385 | || || ||||| | || ||||| | ||| ||| || || |||||| || | Sbjct 1282 AGCGGATCGCTTCCAATGCGTTGACACTCATCAGGCACAGATAAAGCTGCTTT-TTCAGC 1224 Query 208386 GCACGAAGATTAACATTAACCTTCTCGCCATTGACTACGTGG------TCACCCAGACCC 208439 ||||| || | | | || | | || ||||| ||| |||||||| | Sbjct 1223 GCACGCAGGCTGATGGTCACGGTTTTACCGTTGACCTGGTGTGTGCCTTCACCCAG---C 1167 Query 208440 AGGTAATAGTACTGGTTGATCAAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCA 208499 |||| ||||| | ||| ||| | ||||| | ||||||||| ||||| | Sbjct 1166 AGGTGGTAGTA--GCTTG-TCATCTCGATCAGATCGTCGTAGTAGCCGGAAATGTCTTTC 1110 Query 208500 GCACGTTTCTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTA 208559 || || || ||| | |||||| || | |||||||| || || | |||||||| Sbjct 1109 GCGCGCTTGAGGATCTCTTCGTTGGTGACGATATCATCAAATACGATCGCCGGATCGTTG 1050 Query 208560 ACGATGTTCCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAG 208619 ||||| || | ||| || || ||||| ||| ||||||||| || ||||| |||| Sbjct 1049 ACGATATTACGGATAATATGGGTATAAGAACGGGAGTGGATGGTCTCGGAGAATGACCAG 990 Query 208620 GTCTCAGCCCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGA 208679 || || |||| |||||||| || ||||| ||| | ||| | || || ||||| || Sbjct 989 GTTTCCACCCAGGTTTCCAGTTCCGGGATTGAGATCAGCGGCAACAAGGCCACGTTCGGG 930 Query 208680 CCACGGCCCTGGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGT 208739 | |||||||| || || |||| || ||||| |||||||| || |||||||| | |||| Sbjct 929 CTGCGGCCCTGAATCGAATCCAACAGCGTCTGGTATTTCAGATTGCTGATGAAAATGTGT 870 Query 208740 TTCTCGTGATCTGGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCA 208799 ||||| ||||| || | ||| |||||||||||||| |||||||| || ||||||||| Sbjct 869 TTCTCATGATCCGGCAGTGCCTGATAGTCAATACGGTCGCGGGAGACGTCAACTTCTTCA 810 Query 208800 GGACGCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGT 208859 ||||||||||||||||| || ||||||||||| ||||| || || || |||| || || Sbjct 809 GGACGCCAGAAGAAAGACAGCTGTTTCTCAATCAGTTTTTCGAAAATTTCATGTTTTTGC 750 Query 208860 TGGTCGTAACGAGAAACGTTGACGTTTTGACCCAGGAACATGTGTTCTTGTAATTGATCG 208919 || ||| |||| | |||||| || ||||| | ||||| |||| |||| || | | Sbjct 749 TGATCGAAACGCGCAACGTTAACCGACTGACCGAAAAACATCGGTTCCAGTAACTGGTTG 690 Query 208920 TTTTTGTTTTG 208930 ||||||||||| Sbjct 689 TTTTTGTTTTG 679 >seq14546 Length=505 Score = 109 bits (120), Expect = 1e-18 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 16817 TCTCTAATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCC 16876 |||||||| |||| | |||| || |||||||| ||||||||||||||||||||||||| Sbjct 179 TCTCTAATATGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCC 238 Query 16877 GTTCTACCGACTGAACTACA 16896 |||||||||||||||||||| Sbjct 239 GTTCTACCGACTGAACTACA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910925152826520