Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq2366 132 1e-26 seq14555 91.5 4e-14 >seq2366 Length=702 Score = 132 bits (146), Expect = 1e-26 Identities = 188/263 (71%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 318 TGCTGATTACGTGCTGCTTCGCCTGGTGGAAGTAGACCAGATGGATGTGATCGACATCCT 377 ||| | ||| || ||| ||| |||| ||| | || ||||||||||| | ||||| || Sbjct 419 TGCAGCTTATGTTTTGCGACGCTTGGTTGAAATCGATCAGATGGATGTATTGGACATTCT 360 Query 378 GAACGATGACGGCACCCTGAAGCCAATCCGCGAGTGGCCAAAGATATGGCGTACCACGC- 436 ||| ||||||||| ||| ||| | || | || ||||| ||| | |||||||| |||| Sbjct 359 GAAAGATGACGGCGGCCTCAAGGCGATAAGTGAATGGCCTAAGGTGTGGCGTACAACGCT 300 Query 437 TGAGTGGTTTCGACCTGTCATCGACCATCATGAATATGGATGAGACATCAATCGAGACGA 496 | || || |||||| | | | |||| ||| | || || || | || |||| | Sbjct 299 TAAGCGGATTCGACATAAATACTTCAATCACTAATTTTGACGAAACCACCATTGAGAGCA 240 Query 497 TCCTCaaaaaaaTCAAATGGCCTGACAAGGTGAAGAACCTCGAGTTAATCGGTAAGCACG 556 ||||||||||| | |||||||| || ||||| ||||| ||||| | |||| ||||| Sbjct 239 TCCTCAAAAAAGTAAAATGGCCGGATAAGGTCAAGAATCTCGAACTGCTCGGCAAGCATA 180 Query 557 TCGACGTCAATGCATTTAAAAAG 579 | ||||| ||||| ||| || Sbjct 179 TATCCGTCATGGCATTCAAAGAG 157 >seq14555 Length=438 Score = 91.5 bits (100), Expect = 4e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25914 GCGATCGCCAATCTTGTTTACAGCAAGCGCATGGGAAATAACGGCCCGGGCGACGGGTGG 25973 || ||||||||||| || ||| | | ||| |||| || || | || ||||||||| Sbjct 170 GCTATCGCCAATCTGGTATACGCCGATCGCCTGGGCAACAAATCACGCGGTGACGGGTGG 229 Query 25974 AATTATCGCGGTCGTGGACTTATCCAGATCACTGGTCTGAACAACTACCGGGATTGCGGT 26033 || |||||||| |||||||| || ||||| || |||| | | || ||||||| |||||| Sbjct 230 AAATATCGCGGCCGTGGACTGATTCAGATTACCGGTCAGGATAATTACCGGGCATGCGGT 289 Query 26034 AATGGTCTGAAGGTTGATCTAGT 26056 | | ||||| |||| || || Sbjct 290 ACCGCGTTGAAGCTTGACCTGGT 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123645375908172