Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq2293 230 2e-55 >seq2293 Length=1342 Score = 230 bits (254), Expect = 2e-55 Identities = 278/376 (74%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 118117 GATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 118176 ||| || ||||| ||||||| |||||| | ||| |||||||| |||||||| || || Sbjct 1080 GATATCATCAAATACGATCGCCGGATCGTTGACGATATTACGGATAATATGGGTATAAGA 1021 Query 118177 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGTGTC 118236 || |||||||| ||||| ||| | ||| || || ||||| |||||||| | | Sbjct 1020 ACGGGAGTGGATGGTCTCGGAGAATGACCAGGTTTCCACCCAGGTTTCCAGTTCCGGGAT 961 Query 118237 GGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGAAGGAT 118296 || | | ||| | || | | ||||| | |||||||| | ||||||| || | Sbjct 960 TGAGATCAGCGGCAACAAGGCCACGTTCGGGCTGCGGCCCTGAATCGAATCCAACAGCGT 901 Query 118297 CTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG-TAGT 118355 |||||| ||||| ||||||||||| ||||| ||||| ||||||||||| | | || |||| Sbjct 900 CTGGTATTTCAGATTGCTGATGAAAATGTGTTTCTCATGATCCGGCAG-TGCCTGATAGT 842 Query 118356 CGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCT 118415 | |||||||| |||| |||| ||||||||| |||||||||||||| | ||| || |||| Sbjct 841 CAATACGGTCGCGGGAGACGTCAACTTCTTCAGGACGCCAGAAGAAAGACAGCTGTTTCT 782 Query 118416 CGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCT 118475 | ||||| || ||||| | | ||||| ||||| || | || | |||||| | || Sbjct 781 CAATCAGTTTTTCGAAAATTTCATGTTTTTGCTGATCGAAACGCGCAACGTTAACCGACT 722 Query 118476 CGCCGAGGAACATCGG 118491 |||| |||||||| Sbjct 721 GACCGAAAAACATCGG 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477456889935480