Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq10212 143 7e-30 >seq10212 Length=656 Score = 143 bits (158), Expect = 7e-30 Identities = 356/531 (67%), Gaps = 22/531 (4%) Strand=Plus/Minus Query 3560 TGCATGTCTATCTGCTGCCACTCCAGATTGATAATGTTAGACCTCCTTAAGCCAGTAGAA 3619 ||||| || || ||| ||| | || | |||||||||||| | | | |||||| | Sbjct 654 TGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGGTT 595 Query 3620 AGCGCAAACTCTACGACTGACTTTAGCGGTTCCTGGCATTCATCAATCAACCTTTTTGCC 3679 || ||||| || ||| || || || ||||| |||| ||||| | || | || |||| Sbjct 594 AGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTGCC 535 Query 3680 TCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTCGGCTGAGGAACTTTGATGATCGGA 3739 | || || ||||| || | ||||| ||| | ||| || || ||||| | || Sbjct 534 TGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTGGT 475 Query 3740 GCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCCCGGAGGAGTGCCTTAATGAATGAA 3799 | ||| || | | |||||| || | ||| |||||||| | || ||||| || || | | Sbjct 474 GACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAGCA 415 Query 3800 AGGTGAGTTGCTTTTGTGGCTACTGCTGCCGGCTTAGGCTTGAATACTGGAGGCTGCTTC 3859 ||||| | || ||||| | || | | || || || | | ||| | || Sbjct 414 AGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAGATTT------TCGCGGCGGTATC 361 Query 3860 CCATT--CTTCCT--GCAA--GCTTCATC---CATTAACTTCCAGTTTTCCTCATGCCG- 3909 || | ||| || || | || ||| | |||| | |||| ||||| |||| Sbjct 360 ACAATGCCTTTCTTAGCCATTGCATCAACACGCATT---TGCCAGCGCTCCTC-TGCCTT 305 Query 3910 CCGATTAGTCAT-CTTCTGGATGGCGGAGTAAATCTTCGTCTCGGTAATATCCTTCAACT 3968 || ||| ||||| | || || ||| ||| || || | |||||| ||||||||||| Sbjct 304 CCTATTGGTCATGCGGCTAACTG-CGGTGTAGATTTTTGCCTCGGTTATATCCTTCAATA 246 Query 3969 GCATCCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTTGTCATCATCCAGCGACT 4028 | ||| |||||||| |||||||||||| ||||| | |||||| |||| || || | Sbjct 245 AAACCCCCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGATT 186 Query 4029 TCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTCAAAAGTCA 4079 |||| ||||| || || |||||||| | | || ||||| ||||| |||| Sbjct 185 TCTTGTGCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCA 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128265360455380