Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq66 102 3e-17 seq87 98.7 4e-16 >seq66 Length=36490 Score = 102 bits (112), Expect = 3e-17 Identities = 234/344 (68%), Gaps = 25/344 (7%) Strand=Plus/Plus Query 39751 CAGCGACGGGTCGCGGCCGAAATCGACCGTGACAGTCGGGTAATCCTCGCCTTCGACCGT 39810 ||||||||| ||||||||||||||||| ||||| ||||| || |||||| || || Sbjct 8832 CAGCGACGGATCGCGGCCGAAATCGACGGTGACGGTCGGATACGACTCGCCCGAGATGGT 8891 Query 39811 CACCTGGCCGTCGATGATCGCGCGAGCGGCCATCCACTCCCACCGGTTTTCGATCTGAAT 39870 | | ||||| || || | | ||||||||||||||| | ||||| |||||| || Sbjct 8892 GATCGCGCCGTTGACGAGAGTCTGCGCGGCCATCCACTCCAAGCGGTTGTCGATC---AT 8948 Query 39871 GCGCTCGATCCGC---ATGTTCTCGGCAACCACGGCGTCGTAGCGCTGTTGCAGCGACAG 39927 | ||| | || | || ||| || || | |||| | ||||| | | ||| || Sbjct 8949 GTCCTCATGCAGCGCGAGGTACTCCGCGACGATCTTGTCGAAACGCTGCTTCGGCGTCAT 9008 Query 39928 TTCGCCGCCG--ATCG-CTTCGCCGGCCACGCGCGGGATCGC----ACGGGACGGATCGA 39980 |||||||| | || | ||||| | || ||| | || ||| ||||||| | | Sbjct 9009 CACGCCGCCGTAAGCGCCCTCGCCCGGCAGGCGGGTGAACGCTTCGCCGGGACGAACCAG 9068 Query 39981 CGACGTGCTTCGGCTTCACGTAGGCCGGGCGGAACGTCTTGGTCGTGTAGCCCTGTTCGC 40040 || | ||||||| | |||||||||| || ||| |||| ||||||| |||| Sbjct 9069 CGCAG----TCGGCTTGATGTAGGCCGGGGTGAGCGTGCGGGTCCGGTAGCCC---TCGC 9121 Query 40041 GCAGGACTCGAC---CCTGC-ACGTTCGGAGCGACGAACGGTGC 40080 | | | ||| | || || ||| | || ||||||||||| || Sbjct 9122 GGACCA-TCGGCTTGCCCGCAACGGTGGGCGCGACGAACGGAGC 9164 >seq87 Length=13120 Score = 98.7 bits (108), Expect = 4e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 10462 GCTGATGCTCGTCGTTACCGAGGTCGCCGAAGCGATGGAAGGCCATCGCAAAGACCTGAT 10521 ||| ||||||||||| ||||| | || || |||||||| | ||||| || |||| Sbjct 11317 GCTCATGCTCGTCGTGTCCGAGCTGGCGGAGTGTATGGAAGGTGAGCGCAAGAACTTGAT 11258 Query 10522 GGACGACAAGCTCCCGAACCGGAAGATGCTCGAAGTCGAGATGGCCGACGCGGTGATCCG 10581 ||||||| | || ||||| ||||||||| ||||||||| |||||||||| || || || Sbjct 11257 GGACGACCATCTGCCGAAGCGGAAGATGGCGGAAGTCGAGTTGGCCGACGCTGTCATTCG 11198 Query 10582 CGTC 10585 | || Sbjct 11197 CATC 11194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185653631108614