Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq2366 237 4e-58 >seq2366 Length=702 Score = 237 bits (262), Expect = 4e-58 Identities = 323/442 (73%), Gaps = 19/442 (4%) Strand=Plus/Minus Query 17010 ATGGCACTCACCGACAAACAAGAAATGTTCTGTCGCGAGTACCTCATCGACTTAAACGCC 17069 ||||||||||||| ||||||||| |||||||||||||||||||||||||| || |||||| Sbjct 615 ATGGCACTCACCGGCAAACAAGACATGTTCTGTCGCGAGTACCTCATCGATTTGAACGCC 556 Query 17070 ACACAGGCGGCGATTCGGGCGGGGTACAGCGTCAAAACGGCTAACCGCACC-------GC 17122 | || ||||| ||||||||||||||||||| |||||| ||||| | | Sbjct 555 GCGCAAGCGGCCATTCGGGCGGGGTACAGCG-CAAAAC-----ACCGCCCGTAAAATTGG 502 Query 17123 CTCCGAAAACCTGTCAAAACCTGACAT-CCAAAACAGAATCGCTGAACTCAAGAATAAG- 17180 ||| ||||| ||||||| ||||| |||||| |||||||| |||||||| | || | Sbjct 501 TAGCGAGAACCTCACAAAACCAGACATACCAAAAAAGAATCGCCGAACTCAA-ATTACGA 443 Query 17181 CGCAACGAGGACGTGGGTATAAATGCTGCTTATGTGCTCCAGCGCTTAGTTGAGATTGAC 17240 ||||| ||| | || || |||| |||||||| | | ||||| ||||| || || Sbjct 442 CGCAATGAGCAGGTTAACATTGATGCAGCTTATGTTTTGCGACGCTTGGTTGAAATCGAT 383 Query 17241 CAGATGGACGTGGCCGACATTCTCAACGATGACGGATCGTTAAAGGCTGTTAGCCAGTGG 17300 |||||||| || |||||||| || |||||||| | ||||| | || | ||| Sbjct 382 CAGATGGATGTATTGGACATTCTGAAAGATGACGGCGGCCTCAAGGCGATAAGTGAATGG 323 Query 17301 CCCA-GATGCTGGCGTATCACGCTACAGGGCAT-CGACCTGGCTTCGACTATTCGCAACT 17358 || | | || ||||||| ||||| || | || |||| | | | | || || | Sbjct 322 CCTAAGGTG-TGGCGTACAACGCTTAAGCGGATTCGACATAAATACTTCAATCACTAATT 264 Query 17359 TTGACGAGGAAACCGAAGAGACGATCCTCAAAAAGATTAAATGGCCGGACAAAGTTAAGA 17418 ||||||| ||| |||| ||||||||||| | ||||||||||| || || |||| Sbjct 263 TTGACGAAACCACCATTGAGAGCATCCTCAAAAAAGTAAAATGGCCGGATAAGGTCAAGA 204 Query 17419 ACCTGGAACTGCTTGGCAAACA 17440 | || |||||||| ||||| || Sbjct 203 ATCTCGAACTGCTCGGCAAGCA 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127772647421952