Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq14564 111 1e-19 >seq14564 Length=527 Score = 111 bits (122), Expect = 1e-19 Identities = 205/298 (69%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 43178 CCACGAGGAAACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAAC 43237 ||| | || ||| || ||||| |||||| | || || |||||||||| || || || Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 43238 TTTGAAGTCGCTTCGACCCGCACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGA 43297 ||| ||||| || ||| || || || | || | || || || || Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 43298 TTTTAAACTGTCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATG 43357 ||| | |||||| || ||||| |||||||| || ||||| ||||| ||||||| |||||| Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 43358 AGACAAATTGGGTAAAGGCACTTTGTTGACAG-GAAATGAACGACCGTATACGCCCCATT 43416 | || || | |||| || | ||| | ||||| | || |||||||||||||||| Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTA-CGGCCGTATACGCCCCATT 289 Query 43417 CTACAAAATAAGCGGCCACGGCTTTATCGGTGCCCAATTCGAAAGGTTTATTGTTTTC 43474 | |||||||||| | | || |||| ||| | || |||||||||| ||||| Sbjct 288 CCACAAAATAAGAGCCGACCACTTTGCCGGAATCTTGTTTATAAGGTTTATTCTTTTC 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396206626675377