Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq2293 251 5e-62 >seq2293 Length=1342 Score = 251 bits (278), Expect = 5e-62 Identities = 335/458 (73%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 70308 GGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTACCG 70367 |||||| ||||| |||| ||||| || ||||| || || | |||||||||||| | Sbjct 702 GGAACCGATGTTTTTCGGTCAGTCGGTTAACGTTGCGCGTTTCGATCAGCAAAAACA--- 758 Query 70368 TGAC---TTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGT 70424 ||| |||||||| |||||||| ||||| || || ||||||||||| ||||||||||| Sbjct 759 TGAAATTTTCGAAAAACTGATTGAGAAACAGCTGTCTTTCTTCTGGCGTCCTGAAGAAGT 818 Query 70425 CGACATTACCACTGACCGCATCGACT-TCAATACCAAGCTGCAAGAGCACGAGCGCCATA 70483 ||| | || ||||| || |||| ||| || |||| || || ||| || | Sbjct 819 TGACGTCTCCCGCGACCGTATTGACTATCAGG--CA--CTGCCGGATCATGAGAAACACA 874 Query 70484 TTTTCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTA 70543 ||||| | ||||| ||| |||||||||||||||||||| ||||||| ||||| || | Sbjct 875 TTTTCATCAGCAATCTGAAATACCAGACGCTGTTGGATTCGATTCAGGGCCGCAGCCCGA 934 Query 70544 ACGCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGT 70603 ||| | || ||||||||||||| || || || ||||| || ||||| || ||||||| Sbjct 935 ACGTGGCCTTGTTGCCGCTGATCTCAATCCCGGAACTGGAAACCTGGGTGGAAACCTGGT 994 Query 70604 CGTTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATG 70663 | ||||||||||| || ||| ||| ||||| || |||||||| ||| || | | Sbjct 995 CATTCTCCGAGACCATCCACTCCCGTTCTTATACCCATATTATCCGTAATATCGTCAACG 1054 Query 70664 ACCCTAGCATCGTTTTCGACGGCATCGTCACGGACGAAGAGATCATCAGCCGGGCTGTAA 70723 | || ||||| || || | |||||||| ||||||||||| ||| || || | || Sbjct 1055 ATCCGGCGATCGTATTTGATGATATCGTCACCAACGAAGAGATCCTCAAGCGCGC-GAAA 1113 Query 70724 G-CATCTCAAGCGAATATGACAGACTGTACGAAATGAC 70760 | ||| || || | || ||| ||| ||| ||||| Sbjct 1114 GACATTTCCGGCTACTACGACGATCTGATCGAGATGAC 1151 Score = 167 bits (184), Expect = 2e-36 Identities = 276/393 (70%), Gaps = 13/393 (3%) Strand=Plus/Plus Query 69677 GGTCTGCGTAACTCAACTCTGACCGCTCAAATGCCGTGTGAGACGTCCAGCCAGATCACC 69736 |||||||||||||| || ||| | || | ||||| | || || || ||||| || Sbjct 125 GGTCTGCGTAACTCCACCCTGTCAGCGCTGATGCCTTCGGAAACCTCTTCGCAGATTTCC 184 Query 69737 AACTCCACCAATGGTATTGAGCCGCCCCGCGGCC----CGGTATCCGTGAAGTCTTCCAA 69792 ||| ||||||| || |||||||| || || |||| | ||||| ||| | || || Sbjct 185 AACGCCACCAACGGCATTGAGCCACCACGTGGCCACATCAGTATCA---AAG-CGTCGAA 240 Query 69793 AGACGGCATCGTGAAGAT-GGTCGTTCCAGACTTCGCTCAACTGAAAGACCAGTACGAGT 69851 |||||| || | | ||| || ||||| | | | |||||| || | ||||| Sbjct 241 AGACGGTATTTTTGCGCCAGGTAGTGCCAGAATATGAGCGTCTGAAAAACGACTACGAAC 300 Query 69852 ACCTGTGGGATATGCCGGATAACCGCGGCTATCTG--ACTAAGGTGGCCATCATTCAGAA 69909 |||||||| |||||| | ||| ||| || ||| ||| ||| | | || ||||| Sbjct 301 TGCTGTGGGAAATGCCGAACAACGACGGTTACCTGCAACT--GGTCGGTCTGATGCAGAA 358 Query 69910 GTTCTTCGATCAGGCCATCTCTGCGAACACCAACTACGACCCGACTCGCTTCCCTGGCGA 69969 || |||| ||| | || ||||| ||||||||||| || ||||| || |||||||||| Sbjct 359 ATTTATCGACCAGTCGATTTCTGCCAACACCAACTATGATCCGACCCGTTTCCCTGGCGG 418 Query 69970 CAAGGTTCCAATGATGAAGCTGCTGGAAGATCTGCTGTTTGCGTATCAGCAAGGTGTGAA 70029 |||||| || |||| | ||||| || |||| ||||| | || || ||||| || Sbjct 419 CAAGGTGCCTATGAAGCAGCTGTTGAAAGACCTGCTCACCACCTACAAGTTTGGTGTCAA 478 Query 70030 GACGCTTTATTACCACAACACGCGTGATGGCGC 70062 |||||| ||||| || ||||| || || || || Sbjct 479 GACGCTGTATTATCAGAACACCCGCGACGGTGC 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330372152672460