Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq4204 129 7e-25 >seq4204 Length=800 Score = 129 bits (142), Expect = 7e-25 Identities = 218/309 (71%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 153311 AACGAGAACGCGAACAAAGAC-GCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTGG 153369 ||||| || || || |||||| |||||| || ||| || |||||||| |||||||| || Sbjct 438 AACGAAAATGCCAATAAAGACAGCAAGGTGATCCCC-ACCCAGCGCGACCTGCTGGCCGG 496 Query 153370 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGCA 153429 ||||| || || || | ||| | || || |||||| || | || || || Sbjct 497 GATCGTCGCCAAGCATTACGCCAAACAGCATATCCTGCCACGTGACGTGGTGCTGGCCCA 556 Query 153430 TGATTCT-GGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACA 153487 || | || || ||||| || || ||||| |||||| || ||| || || || Sbjct 557 CGAAGCGCGGCGAGATCCACTACCACGATCTCGATTACTCGCCCTTCTTCCCTATGTTCA 616 Query 153488 AACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCA 153547 | |||| ||| | ||||||||||| |||||| | || |||||||| |||||||| || Sbjct 617 A-CTGCATGCTGATCGATTTGAAAGGCATGCTGACCAACGGCTTCAAAATGGGTAATGCC 675 Query 153548 GACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCA 153607 || |||||||| ||||| || ||| ||||| || | | |||||||||| |||| Sbjct 676 GAGATCGAACCACCGAAGTCGATCTCCACCGCGACCGCCGTCACCGCACAGATCATCGCA 735 Query 153608 CAGATTGCC 153616 ||| | ||| Sbjct 736 CAGGTCGCC 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569983698730680