Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq13038 91.5 3e-13 >seq13038 Length=955 Score = 91.5 bits (100), Expect = 3e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 150604 TATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTC 150663 ||||||||| |||||||| || || || || || ||||| |||||| || ||| || Sbjct 329 TATTCTGTTTATCGATGAGATTCACACCATCATCGGTGCCGGTGCGGCTTCCGGTGGGCA 270 Query 150664 TTTGGATATGAGCAATATGTTAAAACCTGCT-CTATCTCGCGGTGAAATTCGTGTCATCG 150722 | ||| |||| || | ||||| ||| || || |||| | || |||||||||| Sbjct 269 GGTCGATGCCGCCAATTTGATCAAACC-GCTGCTGTCCAGCGGCAAGATCCGTGTCATCG 211 Query 150723 GTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTC 150782 || | || |||||| | |||| | || | ||||||||||| || | |||| Sbjct 210 GTTCGACCACCTACCAAGAATTCAGCAATATCTTTGAAAAAGATCGTGCCTTGGCCCGTC 151 Query 150783 GTTTCATGAAGGTTGATATTGTTGAACCGACACTTGAAGAAACTCGCCAGAT 150834 | ||| |||| | || ||| ||||||||| | ||||||||| ||||| Sbjct 150 GCTTCCAGAAGATCGACATTACTGAACCGACGCCGGAAGAAACTATTCAGAT 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147371891256778