Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq8233 147 4e-30 >seq8233 Length=770 Score = 147 bits (162), Expect = 4e-30 Identities = 458/695 (66%), Gaps = 27/695 (4%) Strand=Plus/Minus Query 107478 CGCTAGCCGCGTCGATACGCGTCAGATCGGACTTGCCCGAGAGCTTCTCGTCCATGGAGC 107537 ||| |||||| || ||||||| ||||||| | |||||||| | | ||| || | Sbjct 759 CGCAAGCCGCCTCCGCCCGCGTCATCTCGGACTGGGCCGAGAGCGGCGAGAACATCGATC 700 Query 107538 CCGACACGTCCACCATGACCACGGTGCGGCCCGGCAGCTTCGGCATGTCGGCGATCGAGG 107597 |||||||||| | || || | |||||||| ||| || ||| || ||| Sbjct 699 CCGACACGTCGATCAGGAGCCGCGTGCGGCCATCGAGCCGCGCGTAGTCCTTGACCGACT 640 Query 107598 CGATCAGCGCTTCGTCCAGGGCCGGTTCGAACGTCGGCGCCGCACGAGCCGCCGCGATGT 107657 | || |||| | || || |||| ||||| |||||| || ||| ||| |||| Sbjct 639 TCAGCATCGCTGCCTCGAGCTCCGGCTCGAAGTCCGGCGCATACCGCGCCACCGTGATGA 580 Query 107658 AGCGGAACGGCAGGACGCGGTGCGCGCCGCCCTTGCGGGCCTTGATCGCATCGATCACCA 107717 ||||| | ||||||| ||||| || |||| ||||| | |||||| || | | | Sbjct 579 AGCGGTAGGGCAGGATGCGGTCCGT-CCGCA-TTGCG----TCGATCGCCTC---CGCGA 529 Query 107718 GCTTGCGGT-CGACTCCG--GCCTGCTCCATGTTGCGCAGGTTGCGCAGCAGGGCGAGGT 107774 | ||| || | || |||| || ||| |||||||||||| ||||| || || Sbjct 528 TGGTTCGGCGCGGCACCTCAGCCTTCTGCATCAGGCGCAGGTTGCGGAGCAGCGCCAGCC 469 Query 107775 AGCCGAGCTTTTTGTCTTCCAGCAGACGGGTGAAC--TCCGCCTTCTTGTCGCCGCCGGC 107832 ||||||| || | | | ||| || ||| ||| | |||||| ||||| Sbjct 468 CGCCGAGCCGGTTCTTGGCGATCAGGCGCTCGAAGGTTCCACG--CTTGTCCTTGCCGGA 411 Query 107833 CGACAGCGCTACTTCCCAGGTGTCCGGCGACTCCAGCGTCTGATCGACCAGCCCCTTGTA 107892 ||| |||| || ||||||||||| ||||| ||||| ||||| ||| ||| | Sbjct 410 CGAGAGCGAAACCTCCCAGGTGTCGGGCGAGGCCAGCTCGCCGTCGACGAGCTGCTTCCA 351 Query 107893 CAGGGACTGACGCTCG---TCGTTGGCGGCCTTCGGGTGGCTCAGGAACAGCACGTCGCG 107949 || || || || || || |||| || | |||| ||||||||||||||| Sbjct 350 CACCTTCTCCTGCGCGGCATCCTT--CGGC-TTGGCGTGGACCAGGAACAGCACGTCCTT 294 Query 107950 CAGACGCACTTCCTTGGCGCGGTCGTACTTGGCGATCTGATACGCGTCGAACTTGGCGAA 108009 | ||||| | | |||| |||||||| |||| ||| || ||||||||||||| | Sbjct 293 GATCCGCACCGCGCCGTCGCGATCGTACTTCGCGAGCTGGTAGGCGTCGAACTTGGTCAG 234 Query 108010 CGCCTTGGCGAGGCCGAGCTTCATCTGCTTGGACA---GCGGCGCCTTGCG-GGCGCCGT 108065 |||| || ||||| ||| |||||| || | || | |||||| || | Sbjct 233 CGCCCGCGCCAGGCCCTTCTTGATCTGCGCCGAGACGGGCTGACGCTTGCGCTGCTGCTG 174 Query 108066 CGCGCGGTGGGTTGTACTTCCAGTACAGCGCCACCAGTTCCGACAGTTCGTCGGCGCGCT 108125 || || | | | | | |||||| | ||| | ||| || | || ||||||| |||| Sbjct 173 CGGGCCGAGCG-CATCCGCCCAGTAGATCGCAAGCAGCTCGGTCATCTCGTCGGGCCGCT 115 Query 108126 GGATCACGCGGGCGATCGTCTCCGAGACGAGGCCG 108160 |||||||||| || | ||| || | ||||||||| Sbjct 114 GGATCACGCGAGCCAGCGTATCGGCAACGAGGCCG 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895600000194120