Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq10966 127 3e-24 >seq10966 Length=551 Score = 127 bits (140), Expect = 3e-24 Identities = 196/278 (71%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 147853 TAGAAGCGCTCGGGCAGGCCGTCGATCTGCTCGACATTGAACACCAGATAGGACTTCAGG 147912 |||||| | || |||| ||| ||||||||||||||||||| ||| ||||| |||||| Sbjct 544 TAGAAGTGGTCAGGCAATCCGGCGATCTGCTCGACATTGAAGACCGAATAGGTCTTCAGA 485 Query 147913 AACGGGATCATCCGTTCGACGTCCTTGCCGTTGGAGTCCTTCTCGGTCTTCTTGAACTTC 147972 |||||||| |||||||| || ||| ||| ||| |||| ||| ||||| Sbjct 484 AACGGGATGTCGCGTTCGACCTCGCCGCCATTGCCGTCGGTCTCAGTCCGGGTGAACCGG 425 Query 147973 GAGGCGTAGACGATCAGTTCGGACTT--CTCGCCCTTGCGGACCTGACCACCCAGGTCCC 148030 || |||| || | ||| || | ||||||||||||||| ||| || | || || Sbjct 424 CTCGCATAGATGA--CGGTCGCACCTGACTCGCCCTTGCGGACGTGAGCATCAAGCTCGA 367 Query 148031 TGGCTTGGTTGTAGGTCATCCAGGTCGGGTTGGTGTAGCCGCGCTCCTGGGCGGCGGCCC 148090 | || || ||| | ||||||||||| || |||| | || ||| | | || | | || Sbjct 366 TCGCCTGTTTGAACGTCATCCAGGTTGGCGAGGTGAAACCCCGCGCGAGCGCTTCCGACC 307 Query 148091 ATAGGAGGACCACGTTGATCCCGGTGTAGCGCTGGCCG 148128 | || || | |||||| || ||| ||||| | | |||| Sbjct 306 AGAGCAGCAGCACGTTCATGCCGCTGTAGGGTTCGCCG 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700314683622840