Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq10966 129 8e-25 >seq10966 Length=551 Score = 129 bits (142), Expect = 8e-25 Identities = 196/277 (71%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 149658 TAGAAGCGCTCGGGCAGACCGTCGATCTGCTCGACGTTGAACACCAGATAGGACTTCAGG 149717 |||||| | || |||| ||| ||||||||||||| ||||| ||| ||||| |||||| Sbjct 544 TAGAAGTGGTCAGGCAATCCGGCGATCTGCTCGACATTGAAGACCGAATAGGTCTTCAGA 485 Query 149718 AACGGGATCATCCGCTCGACGTCCTTGCCGTTCGAGTCCTTCTCGGTCTTCTTGAACTTG 149777 |||||||| || ||||| || ||| || ||| |||| ||| ||||| | Sbjct 484 AACGGGATGTCGCGTTCGACCTCGCCGCCATTGCCGTCGGTCTCAGTCCGGGTGAACCGG 425 Query 149778 GAGGCGTAGACGATCAGTTCGGACTT--CTCGCCCTTGCGGACCTGACCACCCAGGTCCC 149835 || |||| || | ||| || | ||||||||||||||| ||| || | || || Sbjct 424 CTCGCATAGATGAC--GGTCGCACCTGACTCGCCCTTGCGGACGTGAGCATCAAGCTCGA 367 Query 149836 TGGCTTGGTTGTAGGTCATCCAGGTTGGGTTGGTGTAACCGCGCTCCTGCGCGGCGGCCC 149895 | || || ||| | |||||||||||||| |||| |||| ||| | |||| | | || Sbjct 366 TCGCCTGTTTGAACGTCATCCAGGTTGGCGAGGTGAAACCCCGCGCGAGCGCTTCCGACC 307 Query 149896 ACAGGAGGACCACGTTGATCCCGGTGTAGCGCTGGCC 149932 | || || | |||||| || ||| ||||| | | ||| Sbjct 306 AGAGCAGCAGCACGTTCATGCCGCTGTAGGGTTCGCC 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709589760341280