Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq2366 111 5e-20 >seq2366 Length=702 Score = 111 bits (122), Expect = 5e-20 Identities = 171/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 11886 CGCCTGGTGGAGATCGACCAGATGGACGTGATCGACATCCTCAACGACGATGGGAGCCTT 11945 ||| |||| || ||||| |||||||| || | ||||| || || || || || |||| Sbjct 400 CGCTTGGTTGAAATCGATCAGATGGATGTATTGGACATTCTGAAAGATGACGGCGGCCTC 341 Query 11946 AAGCCAATCCGCGAGTGGCCGAAAATCTGGCGCACTACGCTTA-GCGGCTTTGATCTGTC 12004 ||| | || | || ||||| || | ||||| || ||||||| |||| || || | Sbjct 340 AAGGCGATAAGTGAATGGCCTAAGGTGTGGCGTACAACGCTTAAGCGGATTCGACATAAA 281 Query 12005 ATCGACCATCATGAACATGAACGAGGATTCGATAGAGACAATCCTCaaaaaaaTTAAATG 12064 | | |||| || | |||| | || |||| |||||||||||| | ||||| Sbjct 280 TACTTCAATCACTAATTTTGACGAAACCACCATTGAGAGCATCCTCAAAAAAGTAAAATG 221 Query 12065 GCCTGACAAGGTGAAGAACCTCGAACTGATTGGTAAGCACGTCGACGTCAACGCATTCAA 12124 ||| || ||||| ||||| ||||||||| | || ||||| | ||||| |||||||| Sbjct 220 GCCGGATAAGGTCAAGAATCTCGAACTGCTCGGCAAGCATATATCCGTCATGGCATTCAA 161 Query 12125 AGA 12127 ||| Sbjct 160 AGA 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143161931128372