Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019519.1 Length=69391 Score E Sequences producing significant alignments: (Bits) Value seq2705 84.2 1e-11 >seq2705 Length=325 Score = 84.2 bits (92), Expect = 1e-11 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 11713 CATGTACGTTTCGAGAATTGTTTCTTCTTCAAGGCGCTCATTCGCATCTTTTTTACGAAT 11772 |||||| ||||| || || || || | ||| | ||||| | || || | || || || Sbjct 300 CATGTAGGTTTCCAGGATCGTCTCCTGTTCCTGACGCTCGTCGGCGTCCTGCTTGCGCAT 241 Query 11773 GCCGATGATTTTGCGAATCGCCTTGGTATCGTAGCCGCGACCCTTGGCTTCACTCAT-GA 11831 || ||| || |||| | ||||||| ||| ||||| ||||||||||||| ||| || Sbjct 240 GCGGATAATGGTGCGCAGCGCCTTGACGTCGAAGCCGTTGCCCTTGGCTTCAC-CATAGA 182 Query 11832 CGTCTTTGATATCG-CCCTGAATAGCTGCTTTTTCTTCTTCAAGGCGCTCGACGCGCTCA 11890 |||| ||||| ||| | |||| || | || ||||| || || ||||| |||||| Sbjct 181 CGTCCTTGATGTCGTCGCTGATGGTCTTC-TTCTCTTCCTCCAGCTTCTCGATGCGCTCG 123 Query 11891 ATGA 11894 |||| Sbjct 122 ATGA 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221886205037192