Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019527.1 Length=43551 Score E Sequences producing significant alignments: (Bits) Value seq2366 170 5e-38 >seq2366 Length=702 Score = 170 bits (188), Expect = 5e-38 Identities = 206/279 (74%), Gaps = 1/279 (0%) Strand=Plus/Minus Query 18770 ATTGACGCCGACTATGTGCTGCGCCGACTGGTCGAGATTGACCAAATGGACGTGCTGGAC 18829 ||||| || | ||||| |||| || |||| || || || || ||||| || ||||| Sbjct 424 ATTGATGCAGCTTATGTTTTGCGACGCTTGGTTGAAATCGATCAGATGGATGTATTGGAC 365 Query 18830 ATCCTGAAAGAGGATGGGGCACTCAAGCCGATCAGCGAGTGGCCAAAGTGCTGGCGAACC 18889 || |||||||| || || | |||||| |||| || || ||||| ||| ||||| || Sbjct 364 ATTCTGAAAGATGACGGCGGCCTCAAGGCGATAAGTGAATGGCCTAAGGTGTGGCGTACA 305 Query 18890 ACA-TTGAGCGGGCTGGACATCAATACCACCGTCACCAATTACGACGATACCACCACAGA 18948 || || ||||| | ||||| ||||| | |||| |||| ||||| ||||||| || Sbjct 304 ACGCTTAAGCGGATTCGACATAAATACTTCAATCACTAATTTTGACGAAACCACCATTGA 245 Query 18949 GAACATCCTCAAGAAGATCAAGTGGCCGGACAAGGTGAAGAACCTAGAGCTTATCGGCAA 19008 || ||||||||| || | || |||||||| ||||| ||||| || || || ||||||| Sbjct 244 GAGCATCCTCAAAAAAGTAAAATGGCCGGATAAGGTCAAGAATCTCGAACTGCTCGGCAA 185 Query 19009 GCATGTCCGCGTCGGGGCATTCAAAGAGCAACTTGATCA 19047 |||| | |||| ||||||||||||| | |||| || Sbjct 184 GCATATATCCGTCATGGCATTCAAAGAGAACATTGAGCA 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139217027425666