Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq1309 114 4e-21 >seq1309 Length=710 Score = 114 bits (126), Expect = 4e-21 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 46046 GGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAG 46105 |||||| ||| |||||| |||||| |||||||| | | || || |||| ||||| Sbjct 681 GGCGACACACATCTGTACAGCAATCATATGGAACAAACCCAGCTACAATTGACCCGCGAA 622 Query 46106 CCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAA 46165 |||||| || |||| ||||| ||||||||||| || ||| | || | || || || Sbjct 621 CCGCGCGCGTTGCCTAAGCTGGTGATCAAACGCAAACCGGCATCGCTGTTCGATTACCGT 562 Query 46166 TACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCC 46225 | ||||||||||||| | | || || || |||||||| || || ||||| || || || Sbjct 561 TTCGAGGATTTTGAAATCGAAGGTTACGATCCGCACCCAGCCATCAAGGCACCGGTTGCC 502 Query 46226 GTTTGA 46231 ||||| Sbjct 501 ATTTGA 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157722561096754