Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq9290 174 4e-39 >seq9290 Length=604 Score = 174 bits (192), Expect = 4e-39 Identities = 386/574 (67%), Gaps = 19/574 (3%) Strand=Plus/Plus Query 13423 ACGGTGGCGAACCTGGACAGCTCGATCTCAGCGCTCTGTCTGGCGTATGACGATCTGCTG 13482 ||||| || ||||| || | | |||| | ||||| || || || ||| ||| || | Sbjct 35 ACGGTAGCTAACCTTGATGGGTTGATCACTGCGCTTTGCCTCCAGTTTGAGGATATGGCG 94 Query 13483 CAGGCGAAAGTGAGTATCCACGACACGCTGGCACAGTATCTGGACGCCAGAAATTTTCCG 13542 ||||| |||||| |||||||| ||| ||| || |||||||| || | |||||||| Sbjct 95 CAGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGATGCTCGTAATTTTCCA 154 Query 13543 CAGGGCAATCCCACTGCAGACCCGTCACAGGAAAAGCTGAAGGTCTTTTATATCGATGCC 13602 | || || || || || || ||| ||||||||||||| ||||||| || |||||| | Sbjct 155 GAAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGTCTTCTACATCGAT-CG 213 Query 13603 AGAAGC-ACCGAGACGGATGAATCTGTTGAATTTACGCTTTCCAGTCCGATGGATTTACA 13661 | || || || | |||||||| ||||| ||| || || |||||| || | | Sbjct 214 TAAGGCAACGGAAAGCGATGAATCGGTTGAGTTTGAACTGTCGAGTCCGGCAGACCTTCG 273 Query 13662 GGGCCAGATGATACCCACGCGGCAGCTGCATTCGTTATGCAGCTGGTGCATCCGGAACAA 13721 ||| | || || || ||||| | ||| |||| | |||||| ||| | Sbjct 274 GGGGCTACGTATCCCGACCCGGCAAATTCATAGCCTATGTACCTGGTGTTCCCGTGGCTG 333 Query 13722 GTACCGGACCGGCGACGGCTGCGACTATGCCGGAACGCGCTATTTCGACAAAAACAATAA 13781 |||||| ||||| | |||||||| |||||||| || || ||||| ||| | || || Sbjct 334 GTACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCGATATTTTGACGACAAGGGCAA 393 Query 13782 TCCGGTTGACGATCCATCGCTGGATGTCTGCAACGGCACGCTGACGGCCTG-CAAGCTCC 13840 ||||||||||||||| ||| ||| |||| ||||| | || ||| | Sbjct 394 TCCGGTTGACGATCCCAGTAAGGACCGTTGCGGCGGCCTGCTGAGTGATTGCCAAAAAAC 453 Query 13841 GGCACGGAGACAGCAACGAGC---TGCCGTTTGGCGGTTTCCCCGGTACATCTCTTATC- 13896 | || || ||||||| | ||||| || || |||||||| | || | ||| Sbjct 454 GTTTTGGTGA---TAACGAGCCATTACCGTTCGGTGGGTTCCCCGGCGCGTCATTGATCC 510 Query 13897 -------AGGAGCTGAT--ATGCGCCAGAAAACCATTGATGCCATCATGGCACACGCTGC 13947 || | ||| ||| |||||||||| | ||||| ||||| || |||| Sbjct 511 GGCAGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGCGGCCATTATGGCGCATGCTGA 570 Query 13948 AGCGGAATATCCGCGAGAGTGCTGCGGCGTGGTG 13981 || || |||||||| ||||| |||||| | ||| Sbjct 571 GGCTGAGTATCCGCGTGAGTGTTGCGGCATTGTG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141853362098034