Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq9290 196 1e-45 >seq9290 Length=604 Score = 196 bits (216), Expect = 1e-45 Identities = 389/571 (68%), Gaps = 15/571 (3%) Strand=Plus/Plus Query 11458 CGGTTGCTAACCTCGACAGTTCGATCACCGCGCTTTGCCTGGCTTACGACGATATGCTGC 11517 |||| |||||||| || | | |||||| ||||||||||| | || |||||| || Sbjct 36 CGGTAGCTAACCTTGATGGGTTGATCACTGCGCTTTGCCTCCAGTTTGAGGATATGGCGC 95 Query 11518 AGGCGAAGGTGACGATACATGACACCCTTGGTAAGTATCTCGATGCGAGAAACTTCACCG 11577 |||| || ||| ||| || || || | | | | ||||| ||||| | || || | | Sbjct 96 AGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGATGCTCGTAATTTTCCAG 155 Query 11578 GAGGCAATCCGACAGCCGATCCGACCCAGGAGAAGCTGAAGGTTTTCTACATCGATGCAA 11637 ||| || || ||||| |||||| ||||| |||||| |||| |||||||||||| | Sbjct 156 AAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGTCTTCTACATCGATCGTA 215 Query 11638 AGAGCAGTGAAACCAATGAAGTTGTTGAGTTCACACTATCCAGCCCTATGGATCTGCAGG 11697 || | |||| | ||||| |||||||| ||| || || || || || | || Sbjct 216 AGGCAACGGAAAGCGATGAATCGGTTGAGTTTGAACTGTCGAGTCCGGCAGACCTTCGGG 275 Query 11698 GGCTGATGATACCTACCCGCCAGCTTCATTCTCTGTGCACATGGTGCATCCGGAACAAGT 11757 |||| || || ||||| || ||||| || || || ||||| ||| | || Sbjct 276 GGCTACGTATCCCGACCCGGCAAATTCATAGCCTATGTACCTGGTGTTCCCGTGGCTGGT 335 Query 11758 ACCGAACCGGCGACGGCTGCGACTATGCCGGTACGCGCTATTTCGACAAAAACAACAACC 11817 |||||||||| | |||||||| ||||||||||| || ||||| ||| | || ||| | Sbjct 336 ACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCGATATTTTGACGACAAGGGCAATC 395 Query 11818 AGGTAAGCGATCC--GTCACTGGATGAATGCAACGGAACGCTGACGGCCTG-CAAACTTC 11874 ||| |||||| || | ||| ||| ||| ||||| | || |||| | Sbjct 396 CGGTTGACGATCCCAGTAA--GGACCGTTGCGGCGGCCTGCTGAGTGATTGCCAAAAAAC 453 Query 11875 GGTTCGGTGAAAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGATCAGG- 11933 | || ||||| ||| | | | |||| ||||||||||| || |||| ||||| || Sbjct 454 GTTTTGGTGATAACGAGCCATTACCGTTCGGTGGGTTCCCCGGCGCGTCATTGATCCGGC 513 Query 11934 AGT-------TGAT--ATGCGTCAGAAAACCATCGATGCCATCATGGCGCATGCCGCTGC 11984 ||| ||| ||| |||||||||| | ||||| ||||||||||| | || Sbjct 514 AGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGCGGCCATTATGGCGCATGCTGAGGC 573 Query 11985 GGAATACCCGCGAGAGTGCTGCGGCGTGGTG 12015 || || ||||| ||||| |||||| | ||| Sbjct 574 TGAGTATCCGCGTGAGTGTTGCGGCATTGTG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123885333554322