Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq9290 214 4e-51 >seq9290 Length=604 Score = 214 bits (236), Expect = 4e-51 Identities = 393/571 (69%), Gaps = 15/571 (3%) Strand=Plus/Plus Query 11988 CGGTTGCTAACCTCGACAGTTCGATCACCGCGCTTTGCCTGGCTTACGACGATATGCTGC 12047 |||| |||||||| || | | |||||| ||||||||||| | || |||||| || Sbjct 36 CGGTAGCTAACCTTGATGGGTTGATCACTGCGCTTTGCCTCCAGTTTGAGGATATGGCGC 95 Query 12048 AGGCGAAGGTGACGATACATGACACCCTTGGTAAGTATCTCGATGCGAGAAACTTCACCG 12107 |||| || ||| ||| || || || | | | | ||||| ||||| | || || | | Sbjct 96 AGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGATGCTCGTAATTTTCCAG 155 Query 12108 GAGGCAATCCGACAGCCGATCCGACCCAGGAGAAGCTGAAGGTTTTCTACATCGATGCAA 12167 ||| || || ||||| |||||| ||||| |||||| |||| |||||||||||| | Sbjct 156 AAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGTCTTCTACATCGATCGTA 215 Query 12168 AGAGCAGTGAAACCAATGAAGTTGTTGAGTTCACACTATCCAGCCCTATGGATCTGCAGG 12227 || | |||| | ||||| |||||||| ||| || || || || || | || Sbjct 216 AGGCAACGGAAAGCGATGAATCGGTTGAGTTTGAACTGTCGAGTCCGGCAGACCTTCGGG 275 Query 12228 GGCTGATGATACCTACCCGCCAGCTTCATTCTCTGTGCACATGGTGCATCCGGAACAAGT 12287 |||| || || ||||| || ||||| || || || ||||| ||| | || Sbjct 276 GGCTACGTATCCCGACCCGGCAAATTCATAGCCTATGTACCTGGTGTTCCCGTGGCTGGT 335 Query 12288 ACCGAACCGGCGACGGCTGCGACTATGCCGGTACGCGCTATTTCGACAAAAACAACAACC 12347 |||||||||| | |||||||| ||||||||||| || ||||| ||| | || ||| | Sbjct 336 ACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCGATATTTTGACGACAAGGGCAATC 395 Query 12348 AGGTAAGCGATCC--GTCACTGGATGAATGCAACGGAACGCTGACGGCCTG-CAAACTTC 12404 ||| |||||| || | ||| ||| ||| ||||| | || |||| | Sbjct 396 CGGTTGACGATCCCAGTAA--GGACCGTTGCGGCGGCCTGCTGAGTGATTGCCAAAAAAC 453 Query 12405 GGTTCGGTGAAAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGATCAGG- 12463 | || ||||| ||| | | | |||| ||||||||||| || |||| ||||| || Sbjct 454 GTTTTGGTGATAACGAGCCATTACCGTTCGGTGGGTTCCCCGGCGCGTCATTGATCCGGC 513 Query 12464 AGT-------TGAT--ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGC 12514 ||| ||| ||| |||||||||| | || |||||||||||||||| || Sbjct 514 AGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGCGGCCATTATGGCGCATGCTGAGGC 573 Query 12515 TGAATATCCTCGTGAGTGTTGCGGCGTGGTG 12545 ||| ||||| ||||||||||||||| | ||| Sbjct 574 TGAGTATCCGCGTGAGTGTTGCGGCATTGTG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120161190886074