Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq9290 150 5e-32 >seq9290 Length=604 Score = 150 bits (166), Expect = 5e-32 Identities = 354/528 (67%), Gaps = 26/528 (5%) Strand=Plus/Plus Query 12307 GTATGACGATCTGCTGCAGGCGAAAGTCACTATTCACGACACAAAAGAGAAATATCTCGA 12366 || ||| ||| || |||||| ||||| || ||||| || | | ||||| || Sbjct 79 GTTTGAGGATATGGCGCAGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGA 138 Query 12367 TGCCAGAAATTTCGCGGACGGCAACCCCACAGCAGACCAGACTCAGGAAAAGCTGCAGGT 12426 ||| | ||||| | || || ||||| ||||| || | | ||||||||||||||||| Sbjct 139 TGCTCGTAATTTTCCAGAAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGT 198 Query 12427 CTGGTATATCGACGGGAA---AACTGGCGAGCTTGCCGGTGAAACCGTTGAATTTGTTCT 12483 || || ||||| | || ||| || || || |||| | ||||| |||| || Sbjct 199 CTTCTACATCGATCGTAAGGCAAC-GGAAAG-----CGATGAATCGGTTGAGTTTGAACT 252 Query 12484 GTCCAGCCCGATGGACCTGCAGGGGCAAATGATCCCGACGCGACAGCTTCATTCCCTGTG 12543 ||| || ||| ||||| | ||||| | |||||||| || || ||||| ||| || Sbjct 253 GTCGAGTCCGGCAGACCTTCGGGGGCTACGTATCCCGACCCGGCAAATTCATAGCCTATG 312 Query 12544 TACCTGGTGCATCCGGAATAAATATCGTACCGGCGACGGCTGCGACTATGCCGGCACCCG 12603 ||||||||| ||| || || ||||| | |||||||| |||||||| ||||| Sbjct 313 TACCTGGTGTTCCCGTGGCTGGTACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCG 372 Query 12604 CTATTTCGATAAAAACAACAACCCGGTAAGCGATCCGTCGCTGGATGAATGCAATGGCAC 12663 ||||| || | || ||| ||||| |||||| ||| ||| ||| Sbjct 373 ATATTTTGACGACAAGGGCAATCCGGTTGACGATCCCAGTAAGGACCGTTGCGGCGGCCT 432 Query 12664 GCTGACGGCCTG-CAAACTCCGATTCGGCGAAAATAACGA---ACTCTCGTTTGGTGGCT 12719 ||||| | || |||| || || || | ||||||| | | |||| ||||| | Sbjct 433 GCTGAGTGATTGCCAAAAAACGTTTTGGTG---ATAACGAGCCATTACCGTTCGGTGGGT 489 Query 12720 TCCCTGGTACGTCGCTGATCAGG-AGT-------TGAT--ATGCGTCAGAAAACCATCGA 12769 |||| || |||| ||||| || ||| ||| ||| |||||||||| | Sbjct 490 TCCCCGGCGCGTCATTGATCCGGCAGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGC 549 Query 12770 TGCGATTATGGCGCATGCCGCCGCTGAATATCCTCGTGAGTGCTGCGG 12817 || |||||||||||||| | ||||| ||||| |||||||| ||||| Sbjct 550 GGCCATTATGGCGCATGCTGAGGCTGAGTATCCGCGTGAGTGTTGCGG 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132869347826178