Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019714.1 Length=39026 Score E Sequences producing significant alignments: (Bits) Value seq9290 168 2e-37 >seq9290 Length=604 Score = 168 bits (186), Expect = 2e-37 Identities = 358/528 (68%), Gaps = 26/528 (5%) Strand=Plus/Plus Query 12354 GTATGACGATCTGCTGCAGGCGAAAGTCACTATTCACGACACAAAAGAGAAATATCTCGA 12413 || ||| ||| || |||||| ||||| || ||||| || | | ||||| || Sbjct 79 GTTTGAGGATATGGCGCAGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGA 138 Query 12414 TGCCAGGAATTTCGCAGACGGCAACCCCACAGCAGACCCGACTCAGGAAAAGCTGCAGGT 12473 ||| | ||||| |||| || ||||| ||||| || ||| ||||||||||||||||| Sbjct 139 TGCTCGTAATTTTCCAGAAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGT 198 Query 12474 CTGGTATATCGACGGGAA---AACTGGCGAGCTTGCCGGTGAAACCGTTGAATTTGTTCT 12530 || || ||||| | || ||| || || || |||| | ||||| |||| || Sbjct 199 CTTCTACATCGATCGTAAGGCAAC-GGAAAG-----CGATGAATCGGTTGAGTTTGAACT 252 Query 12531 GTCCAGCCCGATGGACCTGCATGGGCAAATGATCCCGACGCGACAGCTTCATTCCCTGTG 12590 ||| || ||| ||||| | |||| | |||||||| || || ||||| ||| || Sbjct 253 GTCGAGTCCGGCAGACCTTCGGGGGCTACGTATCCCGACCCGGCAAATTCATAGCCTATG 312 Query 12591 TACCTGGTGCATCCGGAATAAATATCGTACCGGCGACGGCTGTGACTATGCCGGCACCCG 12650 ||||||||| ||| || || ||||| | ||||| || |||||||| ||||| Sbjct 313 TACCTGGTGTTCCCGTGGCTGGTACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCG 372 Query 12651 CTATTTCGACAAAAACAACAACCCGGTAAGCGATCCGTCGCTGGATGAATGCAACGGCAC 12710 ||||| ||| | || ||| ||||| |||||| ||| ||| |||| Sbjct 373 ATATTTTGACGACAAGGGCAATCCGGTTGACGATCCCAGTAAGGACCGTTGCGGCGGCCT 432 Query 12711 GCTGACGGCCTG-CAAACTCCGATTCGGCGAAAATAACGA---ACTCTCGTTTGGTGGCT 12766 ||||| | || |||| || || || | ||||||| | | |||| ||||| | Sbjct 433 GCTGAGTGATTGCCAAAAAACGTTTTGGTG---ATAACGAGCCATTACCGTTCGGTGGGT 489 Query 12767 TCCCGGGCACGTCTTTGATCAGG-AGT-------TGAT--ATGCGTCAGAAAACCATCGA 12816 |||| ||| |||| |||||| || ||| ||| ||| |||||||||| | Sbjct 490 TCCCCGGCGCGTCATTGATCCGGCAGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGC 549 Query 12817 TGCGATTATGGCGCATGCCGCCGCTGAATATCCTCGTGAGTGCTGCGG 12864 || |||||||||||||| | ||||| ||||| |||||||| ||||| Sbjct 550 GGCCATTATGGCGCATGCTGAGGCTGAGTATCCGCGTGAGTGTTGCGG 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124739582774616