Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq9290 172 1e-38 >seq9290 Length=604 Score = 172 bits (190), Expect = 1e-38 Identities = 391/582 (67%), Gaps = 26/582 (4%) Strand=Plus/Plus Query 12259 CTGACGGTTGCGAACATCGAAAGCTCCATTTCTGCTCTGTGTCTTGCGTATGACGATCTG 12318 || ||||| || ||| | || | | || |||| || || || || ||| ||| || Sbjct 32 CTAACGGTAGCTAACCTTGATGGGTTGATCACTGCGCTTTGCCTCCAGTTTGAGGATATG 91 Query 12319 CTGCAGGCTAAAGTCACTATTCACGACACAAAAGAGAAATATCTCGATGCCAGGAATTTC 12378 |||||| ||||| || ||||| || | | ||||| ||||| | ||||| Sbjct 92 GCGCAGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGATGCTCGTAATTTT 151 Query 12379 GCAGACGGTAACCCTTCTGCAGACCAGACTCAGGAAAAGCTGCAGGTCTGGTATATCGAC 12438 |||| || |||||| | || || | | ||||||||||||||||||| || ||||| Sbjct 152 CCAGAAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGTCTTCTACATCGAT 211 Query 12439 GGGAA---AACGGGCGAGCTTGCCGGTGAAACCGTTGAATTTGTTCTGTCCAGCCCGATG 12495 | || ||| || || || |||| | ||||| |||| ||||| || ||| Sbjct 212 CGTAAGGCAAC-GGAAAG-----CGATGAATCGGTTGAGTTTGAACTGTCGAGTCCGGCA 265 Query 12496 GACCTGCAGGGGCAAATGATCCCGACGCGACAGCTTCATTCCCTGTGTACCTGGTGCATC 12555 ||||| | ||||| | |||||||| || || ||||| ||| ||||||||||| | Sbjct 266 GACCTTCGGGGGCTACGTATCCCGACCCGGCAAATTCATAGCCTATGTACCTGGTGTTCC 325 Query 12556 CGGAATAAATATCGCACCGGCGACGGCTGCGACTATGCCGGCACCCGCTATTTCGACAAA 12615 || || || ||||| | |||||||| |||||||| ||||| ||||| ||| | Sbjct 326 CGTGGCTGGTACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCGATATTTTGACGAC 385 Query 12616 AACAACAACCCGGTAAGCGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTG- 12674 || ||| ||||| |||||| ||| ||| |||| ||||| | || Sbjct 386 AAGGGCAATCCGGTTGACGATCCCAGTAAGGACCGTTGCGGCGGCCTGCTGAGTGATTGC 445 Query 12675 CAAACTCCGATTCGGCGAAAATAACGA---ACTCTCGTTTGGTGGCTTCCCGGGCACGTC 12731 |||| || || || | ||||||| | | |||| ||||| ||||| ||| |||| Sbjct 446 CAAAAAACGTTTTGGTG---ATAACGAGCCATTACCGTTCGGTGGGTTCCCCGGCGCGTC 502 Query 12732 TTTGATCAGG-AGT-------TGAT--ATGCGTCAGAAAACCGTCGATGAGATTATGGCG 12781 |||||| || ||| ||| ||| |||||||| | | | ||||||||| Sbjct 503 ATTGATCCGGCAGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGCGGCCATTATGGCG 562 Query 12782 CATGCTGCAGCTGAATATCCTCGCGAGTGTTGCGGCGTGGTG 12823 ||||||| ||||| ||||| || |||||||||||| | ||| Sbjct 563 CATGCTGAGGCTGAGTATCCGCGTGAGTGTTGCGGCATTGTG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126505671050280