Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019716.1 Length=44510 Score E Sequences producing significant alignments: (Bits) Value seq1583 93.3 1e-14 >seq1583 Length=584 Score = 93.3 bits (102), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 38649 GATCCGGAGTCGCCGGAGTCTTTTATGTTACG--CCCAAAACGTCGCCGCTGGGTTAATG 38706 ||||||||| ||||| || | || || | | | |||||| || || ||| | || Sbjct 347 GATCCGGAGCCGCCGAAGGCATT-AT-TCAAGATCCCAAAGCGCGAGCGATGGACGAGTG 404 Query 38707 AAAAGTACACGCGCTGGGTTAAGACACAGCCGTGTGCATGTTGTGGAAAGCCCGCTGATG 38766 |||||| || || ||||||||| | |||||||| || || ||||| || || | || | Sbjct 405 AAAAGTTTACTCGTTGGGTTAAGTCTCAGCCGTGCGCTTGCTGTGGCAACCCATCCGACG 464 Query 38767 ATCCCCACCACCTGATAGGTCACGGTCAGGGTGGAATGGGAACAAAAGCGCATGACCTTT 38826 | || |||||| | || || ||||| || || || |||| || || || ||||| ||| Sbjct 465 ACCCACACCACATCATCGGCCACGGCCAAGGCGGCATGGCCACCAAGGCACATGAT-TTT 523 Query 38827 TTGTGTTGCCTTTGTGCAGAAAGCATCACGACGAGCTGCAT 38867 || | || | ||| | || ||||||||||| ||||| Sbjct 524 TTACCATCCCACTATGCCGGAAACATCACGACGATTTGCAT 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142285285861104