Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq9290 172 2e-38 >seq9290 Length=604 Score = 172 bits (190), Expect = 2e-38 Identities = 385/571 (67%), Gaps = 19/571 (3%) Strand=Plus/Plus Query 13437 GTGGCGAACCTGGACAGTTCGATCTCAGCGCTCTGTCTGGCGTATGACGATCTGCTGCAG 13496 || || ||||| || | | |||| | ||||| || || || ||| ||| || |||| Sbjct 38 GTAGCTAACCTTGATGGGTTGATCACTGCGCTTTGCCTCCAGTTTGAGGATATGGCGCAG 97 Query 13497 GCGAAAGTGAGTATCCACGACACGCTGGCACAGTATCTGGACGCCAGAAATTTTCCGCAG 13556 || |||||| |||||||| ||| ||| || |||||||| || | |||||||| | Sbjct 98 GCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGATGCTCGTAATTTTCCAGAA 157 Query 13557 GGCAATCCCACTGCAGACCCGTCACAGGAAAAGCTGAAGGTCTTTTATATCGATGCCAGA 13616 || || || || || || ||| ||||||||||||| ||||||| || |||||| | | Sbjct 158 GGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGTCTTCTACATCGAT-CGTAA 216 Query 13617 AGC-ACCGAGACGGATGAAGTTGTCGAATTTACGCTTTCCAGTCCGATGGATTTACAGGG 13675 || || || | |||||| || || ||| || || |||||| || | | ||| Sbjct 217 GGCAACGGAAAGCGATGAATCGGTTGAGTTTGAACTGTCGAGTCCGGCAGACCTTCGGGG 276 Query 13676 CCAGATGATACCCACGCGGCAGCTGCATTCGTTATGCAGCTGGTGCATCCGGAACAAGTA 13735 | || || || ||||| | ||| |||| | |||||| ||| | ||| Sbjct 277 GCTACGTATCCCGACCCGGCAAATTCATAGCCTATGTACCTGGTGTTCCCGTGGCTGGTA 336 Query 13736 CCGGACCGGCGACGGCTGCGACTATGCCGGAACGCGCTATTTCGACAAAAACAATAATCC 13795 ||| ||||| | |||||||| |||||||| || || ||||| ||| | || ||||| Sbjct 337 CCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCGATATTTTGACGACAAGGGCAATCC 396 Query 13796 GGTTGACGATCCCTCGCTGGATGTCTGCAACGGCACGCTGACGGCCTG-CAAGCTCCGGC 13854 ||||||||||||| ||| ||| |||| ||||| | || ||| || Sbjct 397 GGTTGACGATCCCAGTAAGGACCGTTGCGGCGGCCTGCTGAGTGATTGCCAAAAAACGTT 456 Query 13855 ACGGAGACAGCAACGAGC---TGCCGTTCGGTGGTTTCCCCGGTACATCTCTTATCAGG- 13910 || || ||||||| | ||||||||||| |||||||| | || | ||| || Sbjct 457 TTGGTGA---TAACGAGCCATTACCGTTCGGTGGGTTCCCCGGCGCGTCATTGATCCGGC 513 Query 13911 AGT-------TGAT--ATGCGCCAGAAAACCATTGATGCCATCATGGCACACGCTGCAGC 13961 ||| ||| ||| |||||||||| | ||||| ||||| || |||| || Sbjct 514 AGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGCGGCCATTATGGCGCATGCTGAGGC 573 Query 13962 GGAATATCCGCGCGAGTGCTGCGGCGTGGTG 13992 || |||||||| ||||| |||||| | ||| Sbjct 574 TGAGTATCCGCGTGAGTGTTGCGGCATTGTG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145024002462496