Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq9290 203 8e-48 >seq9290 Length=604 Score = 203 bits (224), Expect = 8e-48 Identities = 397/582 (68%), Gaps = 26/582 (4%) Strand=Plus/Plus Query 11820 CTGACGGTTGCGAACATCGAAAGCTCCATTTCTGCCCTGTGTCTTGCGTATGACGATCTG 11879 || ||||| || ||| | || | | || |||| || || || || ||| ||| || Sbjct 32 CTAACGGTAGCTAACCTTGATGGGTTGATCACTGCGCTTTGCCTCCAGTTTGAGGATATG 91 Query 11880 CTGCAGGCTAAAGTCACTATTCACGACACAAAAGAAAAATATCTCGATGCCAGAAATTTC 11939 |||||| ||||| || ||||| || | | ||||| ||||| | ||||| Sbjct 92 GCGCAGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGATGCTCGTAATTTT 151 Query 11940 GCAGACGGCAACCCCACAGCAGACCCGGCTCAGGAAAAGCTGCAGGTCTGGTATATCGAC 11999 |||| || ||||| ||||| || |||| ||||||||||||||||||| || ||||| Sbjct 152 CCAGAAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGTCTTCTACATCGAT 211 Query 12000 GGGAA---AACGGGCGAGCTTGCCGGTGAAACCGTTGAATTTGTTCTGTCCAGCCCGATG 12056 | || ||| || || || |||| | ||||| |||| ||||| || ||| Sbjct 212 CGTAAGGCAAC-GGAAAG-----CGATGAATCGGTTGAGTTTGAACTGTCGAGTCCGGCA 265 Query 12057 GACCTCCAGGGGCAAATGATCCCGACGCGACAGCTTCATTCCCTGTGTACCTGGTGCATC 12116 ||||| | ||||| | |||||||| || || ||||| ||| ||||||||||| | Sbjct 266 GACCTTCGGGGGCTACGTATCCCGACCCGGCAAATTCATAGCCTATGTACCTGGTGTTCC 325 Query 12117 CGGAATAAATATCGTACCGGCGACGGCTGCGACTATGCCGGCACCAGCTATTTTGACAAA 12176 || || || ||||| | |||||||| |||||||| ||| | ||||||||| | Sbjct 326 CGTGGCTGGTACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCGATATTTTGACGAC 385 Query 12177 AACAACAACCCGGTAAGCGATCCGTCGCTGGATGAATGCAACGGCACGCTGACGGCCTG- 12235 || ||| ||||| |||||| ||| ||| |||| ||||| | || Sbjct 386 AAGGGCAATCCGGTTGACGATCCCAGTAAGGACCGTTGCGGCGGCCTGCTGAGTGATTGC 445 Query 12236 CAAACTTCGGTTCGGTGAAAATAACGAGC---TCTCGTTTGGTGGGTTCCCTGGCACGTC 12292 |||| || || |||| ||||||||| | |||| ||||||||||| ||| |||| Sbjct 446 CAAAAAACGTTTTGGTG---ATAACGAGCCATTACCGTTCGGTGGGTTCCCCGGCGCGTC 502 Query 12293 TTTGATC--------AGGAGCTGAT--ATGCGGCAGAAAACCATTGATGCCATTATGGCG 12342 |||||| || | ||| ||| |||||||||| | |||||||||||| Sbjct 503 ATTGATCCGGCAGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGCGGCCATTATGGCG 562 Query 12343 CATGCTGCAGCTGAATATCCTCGCGAGTGCTGCGGCGTGGTG 12384 ||||||| ||||| ||||| || ||||| |||||| | ||| Sbjct 563 CATGCTGAGGCTGAGTATCCGCGTGAGTGTTGCGGCATTGTG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127948616362462