Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq8365 87.8 7e-13 >seq8365 Length=642 Score = 87.8 bits (96), Expect = 7e-13 Identities = 135/191 (71%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 55718 ATCGCGTTCATGCGCGA---CAACAAGGAGCACGCCAAGAAGGAGCGCCTGTTCGCGGAC 55774 ||||| ||||||| || ||| ||| | | || |||| |||||||||||| ||| Sbjct 188 ATCGCCTTCATGCAGGATTTCAAGAAGTCGGAGGC---GAAGCAGCGCCTGTTCGGCGAC 132 Query 55775 ATGCGCGAGGGCAAAAAGCGCATCCTGATCGGCGGCAAGGAC---ATGGAAACCGGCGTG 55831 |||||| ||||| ||| |||||||||| || |||| |||| |||||||| Sbjct 131 GTGCGCGCCGGCAAGGTCCGCTTCCTGATCGGGAGCTCGGACACGATGGGGACCGGCGTC 72 Query 55832 AACGTGCAGAAGCGCCTCTACAGCGAGGAGCATCTGGACGCGCCGTGGTTCCCGGCGTCC 55891 |||| |||| ||||||| | | | | || || |||| ||||||| | ||| || Sbjct 71 AACGCGCAGCTGCGCCTCAAGGCCTTGCATCACCTCGACGTGCCGTGGCTGCCGTCGCAG 12 Query 55892 GTCGAGCAGCG 55902 |||||||||| Sbjct 11 ATCGAGCAGCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201285136946373