Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq9290 143 7e-30 seq14555 105 2e-18 >seq9290 Length=604 Score = 143 bits (158), Expect = 7e-30 Identities = 381/573 (66%), Gaps = 22/573 (4%) Strand=Plus/Minus Query 6143 CACCACGCCGCAGCACTCGCGCGGGTATTCTGCCGCAGCATGCGTCAGAATGTCGGCAAT 6202 ||| | |||||| ||||| ||||| || || ||| ||||||||| || |||| | || || Sbjct 604 CACAATGCCGCAACACTCACGCGGATACTCAGCCTCAGCATGCGCCATAATGGCCGCTAT 545 Query 6203 GGTTTTATCGCGCATGGTTACCTCC---------GGATCAGGCTGGCGCCGGGAAAGCCG 6253 |||||| || |||| | || || |||||| |||||||| || || Sbjct 544 GGTTTTCTCTTTCATGCATCCCCCCCCTACTGCCGGATCAATGACGCGCCGGGGAACCCA 485 Query 6254 CCGAAATCGA---GCCGGGCATCCGAACCAAAGCGTTTTTTA-CAGTCGGTCAGCAGGCC 6309 ||||| | || | ||| |||||| |||||||| || || |||||||||| Sbjct 484 CCGAACGGTAATGGCTCGTTATC---ACCAAAACGTTTTTTGGCAATCACTCAGCAGGCC 428 Query 6310 CGAGCATTTATCCTGTGCCGGGTCGGTCA-CCGGGTTACCTTTCAGATCAAACATGCGCG 6368 ||| |||| | | ||| |||| |||| || || || ||||| || | Sbjct 427 GCCGCAACGGTCCT-TACTGGGATCGTCAACCGGATTGCCCTTGTCGTCAAAATATCGGG 369 Query 6369 GGCCGTTGTAGGTACAGCCGTCACCGCTGCGGTATTTGTTGCGGCAGGCCCAGGTGCAGA 6428 ||| || ||||| | |||| | ||||| | ||| | |||||| || | Sbjct 368 TACCGGCATAATCGCAGCCTTTACCGGTTCGGTACCAGCCACGGGAACACCAGGTACATA 309 Query 6429 CCGCTGTGA-TTTGCCGCGTCGGGATCAGCAGTCCCTGCAGATCCATCGGGCTGGAGAGG 6487 ||| ||| ||||||| |||||||| | || ||| | || || ||| || || || Sbjct 308 G-GCTATGAATTTGCCGGGTCGGGATACGTAGCCCCCGAAGGTCTGCCGGACTCGACAGT 250 Query 6488 CGGAACTCCACCACTTCATTGTCTTCAGCCGCCTTGCTGTCGATGTAAAACACCTGGCGG 6547 ||||| ||| ||||| | ||| | ||||| | |||||||| || ||||| | Sbjct 249 TCAAACTCAACCGATTCATCGCTTTCCGTTGCCTTACGATCGATGTAGAAGACCTGCAGC 190 Query 6548 AAATACTGCCCCGGATCGGCAGACGGGTTGCCGTCGGGAAAGGTGCGCGCATCGAGATAC 6607 | ||| ||||||| || | ||||| || || ||||| | || ||||| ||||| Sbjct 189 TTTTCCTGTACCGGATCAGCTGTAGGGTTTCCTTCTGGAAAATTACGAGCATCCAGATAG 130 Query 6608 TGGCCGAACGTATCCAGAA-CAGTGACCTTTGCCTGTACCATGTCATCAAAGCGCAGGCA 6666 || | |||||||| | | ||| || || ||||| |||| || ||||| | ||||| Sbjct 129 TGAACCAACGTATCGTGGATCAGC-ACTTTGGCCTGCGCCATATCCTCAAACTGGAGGCA 71 Query 6667 GAGCGCGGTCACCACGCCATCAAGGTTAGCGAC 6699 ||||| || | || |||||||||||||| || Sbjct 70 AAGCGCAGTGATCAACCCATCAAGGTTAGCTAC 38 >seq14555 Length=438 Score = 105 bits (116), Expect = 2e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22367 ACAAGGTCAAGTTTCAGCGCGGCGCCGCAATCGCGGTAATTCTCGAGCCCGGTGATCTGG 22426 || |||||||| |||| ||||| ||||| | |||||||| || | ||||| ||||| Sbjct 312 ACCAGGTCAAGCTTCAACGCGGTACCGCATGCCCGGTAATTATCCTGACCGGTAATCTGA 253 Query 22427 ATGAGCCCGCGTCCGCGATATTTCCAGCCATCACCCGGGGCGTTATTACCGAGGCGCTTG 22486 || || || || |||||||||||||| || ||||| | | || || || ||||| | | Sbjct 252 ATCAGTCCACGGCCGCGATATTTCCACCCGTCACCGCGTGATTTGTTGCCCAGGCGATCG 193 Query 22487 CTGTAAACCAGATTGGCGATCGC 22509 ||| |||||||||||||| || Sbjct 192 GCGTATACCAGATTGGCGATAGC 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124694790680668