Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq14564 109 5e-19 >seq14564 Length=527 Score = 109 bits (120), Expect = 5e-19 Identities = 181/259 (70%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 106740 CCAAGCGGACACGCCTTTTTGCGGCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAAC 106799 ||| |||| ||||| ||||| ||||| | || || | |||||||| || || || Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 106800 TTTAAAATCGGCGCGCCCTTTGCATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGT 106859 |||||| || | || || | ||| || ||||| | | || || || || | Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATC-T 409 Query 106860 TTTTAAGGCA-TCGTTTATTCCATCACCGCCGCAGATGGGAATAAAACCGTACAATAAAT 106918 ||| || | ||||| || ||||||||||| ||||| || ||||| ||||||| |||| Sbjct 408 CTTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAAT 349 Query 106919 GTGATAAATTGGGCAGCGGGACTTTATCTACGGGAAAATTGCGGCCATACACGCCCCATT 106978 | | | || || ||| | ||||| |||| ||||| ||||| || |||||||||| Sbjct 348 GCGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATT 289 Query 106979 CGACAAAATACGCGGCGAC 106997 | |||||||| | | |||| Sbjct 288 CCACAAAATAAGAGCCGAC 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425327751347319