Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq2293 118 1e-21 >seq2293 Length=1342 Score = 118 bits (130), Expect = 1e-21 Identities = 216/313 (69%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 42206 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTT 42265 ||||| |||| || ||| ||||| || ||||||||| |||| | |||||||| Sbjct 733 GTTGCGCGTTTCGATCAGCAAAAACATGAAATTTTCGAAAAACTGATTGAGAAACAGCTG 792 Query 42266 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42325 ||||||||||||||||| |||||||| || | || |||||||| | ||| | Sbjct 793 TCTTTCTTCTGGCGTCCTGAAGAAGTTGACGTCTCCCGCGACCGTATTGACTATCAGGCA 852 Query 42326 CTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGAT 42385 || || || ||||| ||| ||||||| || || | || || || ||||| ||| Sbjct 853 CTGCCGGATCATGAGAAACACATTTTCATCAGCAATCTGAAATACCAGACGCTGTTGGAT 912 Query 42386 ACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCA- 42443 | |||||||| || | || ||| | || || ||||| | ||| | || | | Sbjct 913 TCGATTCAGGGCCGCAGCCCGAACGTGGCCTTGTTGCCGCT--GATCTCAATCCCGGAAC 970 Query 42444 TGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGC 42503 ||||||||||| | ||||| ||| | || || ||||||||| |||| ||| || | Sbjct 971 TGGAAACCTGGGTGGAAACCTGGTCATTCTCCGAGACCATCCACTCCCGTTCTTATACCC 1030 Query 42504 ATATTCAACGTAA 42516 ||||| ||||| Sbjct 1031 ATATTATCCGTAA 1043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557889945713880