Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq14858 96.9 2e-14 >seq14858 Length=1827956 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||||| | ||||| | ||||| ||||||||||| ||||| || Sbjct 1581092 TTGTAGTCAGACAGAGTTCGGCCGTCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGC 1581033 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| ||||| ||||||||||| || |||||| || ||| || || || || Sbjct 1581032 TGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCT 1580973 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||| || || || || ||||| |||||||| || || || || Sbjct 1580972 GACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTG 1580917 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||||| | || || | ||||| ||||||||||| ||||| || Sbjct 1581616 TTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGC 1581557 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| ||||| ||||||||||| || |||||| || ||| || || || || Sbjct 1581556 TGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCT 1581497 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||| || ||||| || ||||| |||||||| || || || || Sbjct 1581496 GACGGCTCAACATCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTG 1581441 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||||| | || || | ||||| ||||||||||| ||||| || Sbjct 1580235 TTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGC 1580176 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| ||||| ||||||||||| || |||||| || ||| || || || || Sbjct 1580175 TGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCT 1580116 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||| || || || || ||||| |||||||| || || || || Sbjct 1580115 GACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTG 1580060 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||||| | || || | ||||| ||||||||||| ||||| || Sbjct 1580864 TTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGC 1580805 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| ||||| ||||||||||| || |||||| || ||| || || || || Sbjct 1580804 TGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCT 1580745 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||| || || || || ||||| |||||||| || || || || Sbjct 1580744 GACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTG 1580689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267541739604428