Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq2293 187 2e-42 >seq2293 Length=1342 Score = 187 bits (206), Expect = 2e-42 Identities = 214/284 (75%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 76522 CGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGATGA 76581 ||||||| | |||||||| | ||||||| || ||||||| ||||| |||||||||| Sbjct 937 CGTTCGGGCTGCGGCCCTGAATCGAATCCAACAGCGTCTGGTATTTCAGATTGCTGATGA 878 Query 76582 AGATGTGCTTCTCGTGATCCGGCAGGTTCATG-TAGTCGATTCGGTCACGGGTCACGTTA 76640 | ||||| ||||| ||||||||||| | | || ||||| || ||||| |||| |||| | Sbjct 877 AAATGTGTTTCTCATGATCCGGCAG-TGCCTGATAGTCAATACGGTCGCGGGAGACGTCA 819 Query 76641 ACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACTTCGCA 76700 ||||||||||| ||||||||||| | ||| || || |||||||| || ||||| | || Sbjct 818 ACTTCTTCAGGACGCCAGAAGAAAGACAGCTGTTTCTCAATCAGTTTTTCGAAAATTTCA 759 Query 76701 TGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGGCTGAGTC 76760 ||||| ||||| ||| | || | |||||| | || |||| |||||||| | | Sbjct 758 TGTTTTTGCTGATCGAAACGCGCAACGTTAACCGACTGACCGAAAAACATCGGTT---CC 702 Query 76761 AGGAA---GTTGAATTTGTTTTGGTTGAAAGTGCTGTAAGACAT 76801 || || |||| ||||||||| || ||| |||||| ||| Sbjct 701 AGTAACTGGTTGTTTTTGTTTTGAGAAAATGTGGTGTAAGCCAT 658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455304205838040